U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    TMEM202 transmembrane protein 202 [ Homo sapiens (human) ]

    Gene ID: 338949, updated on 5-Mar-2024

    Summary

    Official Symbol
    TMEM202provided by HGNC
    Official Full Name
    transmembrane protein 202provided by HGNC
    Primary source
    HGNC:HGNC:33733
    See related
    Ensembl:ENSG00000187806 AllianceGenome:HGNC:33733
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Summary
    Predicted to be integral component of membrane. Predicted to be active in plasma membrane. [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Restricted expression toward testis (RPKM 5.8) See more
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Location:
    15q23-q24.1
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 15 NC_000015.10 (72398305..72408367)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 15 NC_060939.1 (70215636..70225698)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 15 NC_000015.9 (72690646..72700708)

    Chromosome 15 - NC_000015.10Genomic Context describing neighboring genes Neighboring gene H3K27ac hESC enhancer GRCh37_chr15:72668147-72668703 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 9721 Neighboring gene HEXA antisense RNA 1 Neighboring gene ribosomal protein L12 pseudogene 35 Neighboring gene TMEM202 antisense RNA 1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:72743763-72744262 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 9722 Neighboring gene PHB1 pseudogene 20 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 9723 Neighboring gene ReSE screen-validated silencer GRCh37_chr15:72766566-72766762 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 6624 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 9724 Neighboring gene ariadne RBR E3 ubiquitin protein ligase 1 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 6625 Neighboring gene MPRA-validated peak2380 silencer Neighboring gene microRNA 630

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001080462.3NP_001073931.1  transmembrane protein 202

      See identical proteins and their annotated locations for NP_001073931.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longest, protein-coding variant.
      Source sequence(s)
      AC009690, AC079322
      Consensus CDS
      CCDS32287.1
      UniProtKB/Swiss-Prot
      A6NGA9
      Related
      ENSP00000340212.3, ENST00000341689.4

    RNA

    1. NR_148418.2 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC009690, AC079322, AK131033, BX105628
    2. NR_148419.2 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC009690, AC079322, AK131033

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000015.10 Reference GRCh38.p14 Primary Assembly

      Range
      72398305..72408367
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_011521497.3XP_011519799.1  transmembrane protein 202 isoform X1

    2. XM_024449910.2XP_024305678.1  transmembrane protein 202 isoform X2

    3. XM_011521499.3XP_011519801.1  transmembrane protein 202 isoform X3

      See identical proteins and their annotated locations for XP_011519801.1

      UniProtKB/TrEMBL
      A0A3B3ITB0
      Related
      ENSP00000497819.1, ENST00000649825.1

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060939.1 Alternate T2T-CHM13v2.0

      Range
      70215636..70225698
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_054377803.1XP_054233778.1  transmembrane protein 202 isoform X2

    2. XM_054377804.1XP_054233779.1  transmembrane protein 202 isoform X3

      UniProtKB/TrEMBL
      A0A3B3ITB0
    3. XM_054377802.1XP_054233777.1  transmembrane protein 202 isoform X1