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    Morc3 microrchidia 3 [ Mus musculus (house mouse) ]

    Gene ID: 338467, updated on 23-Jun-2021

    Summary

    Official Symbol
    Morc3provided by MGI
    Official Full Name
    microrchidia 3provided by MGI
    Primary source
    MGI:MGI:2136841
    See related
    Ensembl:ENSMUSG00000039456
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    NXP2; Zcwcc3; AI452146; BF318192; D16Jhu32e; 1110051N18Rik
    Expression
    Ubiquitous expression in CNS E18 (RPKM 8.1), CNS E11.5 (RPKM 7.9) and 27 other tissues See more
    Orthologs
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    Genomic context

    See Morc3 in Genome Data Viewer
    Location:
    16; 16 C4
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 16 NC_000082.7 (93629009..93672964)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 16 NC_000082.6 (93832121..93876077)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 16 NC_000082.5 (93832366..93876318)

    Chromosome 16 - NC_000082.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 41501 Neighboring gene DOP1 leucine zipper like protein B Neighboring gene RIKEN cDNA 2310043M15 gene Neighboring gene predicted gene, 30881 Neighboring gene chromatin assembly factor 1, subunit B (p60) Neighboring gene claudin 14 Neighboring gene predicted gene, 31012

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables methylated histone binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    located_in PML body IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in PML body ISO
    Inferred from Sequence Orthology
    more info
    PubMed 
    located_in nucleoplasm IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in nucleoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in nucleus ISO
    Inferred from Sequence Orthology
    more info
    PubMed 

    General protein information

    Preferred Names
    MORC family CW-type zinc finger protein 3
    Names
    nuclear matrix protein 2
    zinc finger CW-type coiled-coil domain protein 3
    zinc finger, CW-type with coiled-coil domain 3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001045529.3NP_001038994.2  MORC family CW-type zinc finger protein 3

      Status: VALIDATED

      Source sequence(s)
      AK172896, BC098072
      Consensus CDS
      CCDS79490.1
      UniProtKB/Swiss-Prot
      F7BJB9
      Related
      ENSMUSP00000144369.2, ENSMUST00000202261.5
      Conserved Domains (4) summary
      pfam07496
      Location:409446
      zf-CW; CW-type Zinc Finger
      cl00075
      Location:29136
      HATPase_c; Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins
      cl09111
      Location:768875
      Prefoldin; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits ...
      cl21462
      Location:698721
      bZIP; Basic leucine zipper (bZIP) domain of bZIP transcription factors: a DNA-binding and dimerization domain

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000082.7 Reference GRCm39 C57BL/6J

      Range
      93629009..93672964
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006523060.4XP_006523123.1  MORC family CW-type zinc finger protein 3 isoform X1

      Conserved Domains (4) summary
      TIGR02168
      Location:629810
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type
      pfam07496
      Location:340377
      zf-CW; CW-type Zinc Finger
      pfam17942
      Location:180313
      Morc6_S5; Morc6 ribosomal protein S5 domain 2-like
      cl00075
      Location:1466
      HATPase; Histidine kinase-like ATPase domain
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