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    Akap17b A kinase (PRKA) anchor protein 17B [ Mus musculus (house mouse) ]

    Gene ID: 338351, updated on 31-Jan-2019

    Summary

    Official Symbol
    Akap17bprovided by MGI
    Official Full Name
    A kinase (PRKA) anchor protein 17Bprovided by MGI
    Primary source
    MGI:MGI:2443758
    See related
    Ensembl:ENSMUSG00000059708
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Talia; PRKA17B; Sfrs17b; Srsf17b; AA407619; AKAP-17B; B230333C21Rik; C230056F04Rik
    Expression
    Broad expression in CNS E18 (RPKM 2.2), frontal lobe adult (RPKM 1.8) and 21 other tissues See more

    Genomic context

    See Akap17b in Genome Data Viewer
    Location:
    X; X A3.3
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) X NC_000086.7 (36608173..36645472, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) X NC_000086.6 (34148178..34185409, complement)

    Chromosome X - NC_000086.7Genomic Context describing neighboring genes Neighboring gene predicted gene 14569 Neighboring gene progesterone receptor membrane component 1 Neighboring gene ribosomal protein L7 pseudogene Neighboring gene solute carrier family 25, member 43

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Gene trapped (1) 

    Pathways from BioSystems

    • mRNA processing, organism-specific biosystem (from WikiPathways)
      mRNA processing, organism-specific biosystemAdapted from Reactome, see: [http://www.reactome.org/cgi-bin/eventbrowser_st_id?ST_ID=REACT_1675.1 REACT 1675.1] This process describes the conversion of precursor messenger RNA into mature messenge...

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    RNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    molecular_function ND
    No biological Data available
    more info
     
    nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    RNA splicing IEA
    Inferred from Electronic Annotation
    more info
     
    biological_process ND
    No biological Data available
    more info
     
    mRNA processing IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    cellular_component ND
    No biological Data available
    more info
     
    nucleus IEA
    Inferred from Electronic Annotation
    more info
     
    spliceosomal complex IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    A-kinase anchor protein 17B
    Names
    protein Talia
    protein kinase A-anchoring protein 17B
    serine/arginine-rich splicing factor 17B
    splicing factor, arginine/serine-rich 17b

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001081956.1NP_001075425.1  A-kinase anchor protein 17B

      See identical proteins and their annotated locations for NP_001075425.1

      Status: VALIDATED

      Source sequence(s)
      AK046007, AL450397, BB665845, BG063043, DV649862
      Consensus CDS
      CCDS40924.1
      UniProtKB/Swiss-Prot
      A2A3V1
      Related
      ENSMUSP00000052042.6, ENSMUST00000051906.12
      Conserved Domains (2) summary
      cd12264
      Location:143262
      RRM_AKAP17A; RNA recognition motif found in A-kinase anchor protein 17A (AKAP-17A) and similar proteins
      cl02121
      Location:554581
      Med31; SOH1

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000086.7 Reference GRCm38.p4 C57BL/6J

      Range
      36608173..36645472 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006541384.3XP_006541447.1  A-kinase anchor protein 17B isoform X1

      See identical proteins and their annotated locations for XP_006541447.1

      UniProtKB/Swiss-Prot
      A2A3V1
      Conserved Domains (2) summary
      cd12264
      Location:143262
      RRM_AKAP17A; RNA recognition motif found in A-kinase anchor protein 17A (AKAP-17A) and similar proteins
      cl02121
      Location:554581
      Med31; SOH1
    2. XM_006541383.3XP_006541446.1  A-kinase anchor protein 17B isoform X1

      See identical proteins and their annotated locations for XP_006541446.1

      UniProtKB/Swiss-Prot
      A2A3V1
      Conserved Domains (2) summary
      cd12264
      Location:143262
      RRM_AKAP17A; RNA recognition motif found in A-kinase anchor protein 17A (AKAP-17A) and similar proteins
      cl02121
      Location:554581
      Med31; SOH1
    3. XM_006541385.2XP_006541448.1  A-kinase anchor protein 17B isoform X2

      Conserved Domains (1) summary
      cl02121
      Location:302327
      Med31; SOH1
    4. XM_017318532.1XP_017174021.1  A-kinase anchor protein 17B isoform X1

      UniProtKB/Swiss-Prot
      A2A3V1
      Conserved Domains (2) summary
      cd12264
      Location:143262
      RRM_AKAP17A; RNA recognition motif found in A-kinase anchor protein 17A (AKAP-17A) and similar proteins
      cl02121
      Location:554581
      Med31; SOH1
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