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    Cog3 component of oligomeric golgi complex 3 [ Mus musculus (house mouse) ]

    Gene ID: 338337, updated on 19-Mar-2019

    Summary

    Official Symbol
    Cog3provided by MGI
    Official Full Name
    component of oligomeric golgi complex 3provided by MGI
    Primary source
    MGI:MGI:2450151
    See related
    Ensembl:ENSMUSG00000034893
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    E430004N23
    Expression
    Ubiquitous expression in limb E14.5 (RPKM 10.2), CNS E14 (RPKM 8.8) and 28 other tissues See more
    Orthologs

    Genomic context

    See Cog3 in Genome Data Viewer
    Location:
    14; 14 D3
    Exon count:
    23
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 14 NC_000080.6 (75702351..75754576, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 14 NC_000080.5 (76102158..76154300, complement)

    Chromosome 14 - NC_000080.6Genomic Context describing neighboring genes Neighboring gene predicted gene, 36219 Neighboring gene glutamate rich 6B Neighboring gene glutamate rich 6B Neighboring gene solute carrier family 25, member 30 Neighboring gene predicted gene, 36271

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (2) 

    Pathways from BioSystems

    General gene information

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    protein transporter activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    protein transporter activity ISO
    Inferred from Sequence Orthology
    more info
     
    Process Evidence Code Pubs
    ER to Golgi vesicle-mediated transport ISO
    Inferred from Sequence Orthology
    more info
     
    Golgi organization IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Golgi organization ISO
    Inferred from Sequence Orthology
    more info
     
    intra-Golgi vesicle-mediated transport IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    intra-Golgi vesicle-mediated transport ISO
    Inferred from Sequence Orthology
    more info
     
    intracellular protein transport IEA
    Inferred from Electronic Annotation
    more info
     
    protein glycosylation ISO
    Inferred from Sequence Orthology
    more info
     
    protein localization to organelle ISO
    Inferred from Sequence Orthology
    more info
     
    protein stabilization ISO
    Inferred from Sequence Orthology
    more info
     
    retrograde vesicle-mediated transport, Golgi to ER ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    Golgi apparatus ISO
    Inferred from Sequence Orthology
    more info
     
    Golgi transport complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Golgi transport complex ISO
    Inferred from Sequence Orthology
    more info
     
    cis-Golgi network IEA
    Inferred from Electronic Annotation
    more info
     
    cytosol ISO
    Inferred from Sequence Orthology
    more info
     
    membrane IEA
    Inferred from Electronic Annotation
    more info
     
    plasma membrane ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    conserved oligomeric Golgi complex subunit 3
    Names
    COG complex subunit 3
    component of oligomeric golgi complex 2

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_177381.3NP_796355.2  conserved oligomeric Golgi complex subunit 3

      Status: VALIDATED

      Source sequence(s)
      AA116446, AK140362, BC035046, BM936047, BM936385, CF749874, CO432313
      Consensus CDS
      CCDS36979.1
      UniProtKB/TrEMBL
      E9QL65, Q3USH9
      Related
      ENSMUSP00000045016.7, ENSMUST00000049168.7
      Conserved Domains (1) summary
      pfam04136
      Location:131274
      Sec34; Sec34-like family

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000080.6 Reference GRCm38.p4 C57BL/6J

      Range
      75702351..75754576 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_011245092.1XP_011243394.1  conserved oligomeric Golgi complex subunit 3 isoform X2

      Conserved Domains (1) summary
      pfam04136
      Location:150
      Sec34; Sec34-like family
    2. XM_006519148.3XP_006519211.1  conserved oligomeric Golgi complex subunit 3 isoform X1

      Conserved Domains (1) summary
      pfam04136
      Location:131274
      Sec34; Sec34-like family
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