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    Cecr2 CECR2, histone acetyl-lysine reader [ Mus musculus (house mouse) ]

    Gene ID: 330409, updated on 22-Aug-2021

    Summary

    Official Symbol
    Cecr2provided by MGI
    Official Full Name
    CECR2, histone acetyl-lysine readerprovided by MGI
    Primary source
    MGI:MGI:1923799
    See related
    Ensembl:ENSMUSG00000071226
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Gtl; Gtl4; 2610101O16Rik; 2810409N01Rik
    Expression
    Ubiquitous expression in testis adult (RPKM 4.5), CNS E11.5 (RPKM 4.0) and 23 other tissues See more
    Orthologs
    NEW
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    Genomic context

    See Cecr2 in Genome Data Viewer
    Location:
    6 F1; 6 56.97 cM
    Exon count:
    19
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 6 NC_000072.7 (120643275..120748152)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 6 NC_000072.6 (120666314..120771191)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 6 NC_000072.5 (120616439..120721209)

    Chromosome 6 - NC_000072.7Genomic Context describing neighboring genes Neighboring gene haloacid dehalogenase like hydrolase domain containing 5 Neighboring gene RIKEN cDNA 1700072O05 gene Neighboring gene nonconserved acetylation island sequence M73 enhancer Neighboring gene predicted gene, 53339 Neighboring gene solute carrier family 25 (mitochondrial carrier), member 18 Neighboring gene ATPase, H+ transporting, lysosomal V1 subunit E1 Neighboring gene ribosomal protein S27 pseudogene

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    General gene information

    Markers

    Homology

    Clone Names

    • KIAA1740

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables ATP-dependent chromatin remodeler activity ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    part_of CERF complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    part_of CERF complex ISO
    Inferred from Sequence Orthology
    more info
     
    part_of ISWI-type complex IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    located_in euchromatin IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in nucleus ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    cat eye syndrome critical region protein 2 homolog
    Names
    cat eye syndrome chromosome region, candidate 2 homolog
    gene trap locus 4

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001128151.2NP_001121623.1  cat eye syndrome critical region protein 2 homolog isoform 1

      Status: VALIDATED

      Source sequence(s)
      AC084273, AC135105
      Consensus CDS
      CCDS51890.1
      UniProtKB/Swiss-Prot
      E9Q2Z1
      Related
      ENSMUSP00000108306.2, ENSMUST00000112686.8
      Conserved Domains (2) summary
      cd05509
      Location:418518
      Bromo_gcn5_like; Bromodomain; Gcn5_like subfamily. Gcn5p is a histone acetyltransferase (HAT) which mediates acetylation of histones at lysine residues; such acetylation is generally correlated with the activation of transcription. Bromodomains are 110 amino acid long ...
      pfam15614
      Location:244284
      WHIM3; WSTF, HB1, Itc1p, MBD9 motif 3
    2. NM_001368706.1NP_001355635.1  cat eye syndrome critical region protein 2 homolog isoform 2

      Status: VALIDATED

      Source sequence(s)
      AC084273, AC135105
      Consensus CDS
      CCDS90117.1
      Related
      ENSMUSP00000098556.3, ENSMUST00000100993.9
      Conserved Domains (2) summary
      cd05509
      Location:418518
      Bromo_gcn5_like; Bromodomain; Gcn5_like subfamily. Gcn5p is a histone acetyltransferase (HAT) which mediates acetylation of histones at lysine residues; such acetylation is generally correlated with the activation of transcription. Bromodomains are 110 amino acid long ...
      PHA03247
      Location:5581031
      PHA03247; large tegument protein UL36; Provisional

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000072.7 Reference GRCm39 C57BL/6J

      Range
      120643275..120748152
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017321659.3XP_017177148.1  cat eye syndrome critical region protein 2 homolog isoform X1

      Conserved Domains (2) summary
      cd05509
      Location:418518
      Bromo_gcn5_like; Bromodomain; Gcn5_like subfamily. Gcn5p is a histone acetyltransferase (HAT) which mediates acetylation of histones at lysine residues; such acetylation is generally correlated with the activation of transcription. Bromodomains are 110 amino acid long ...
      PHA03247
      Location:5581030
      PHA03247; large tegument protein UL36; Provisional
    2. XM_011241398.3XP_011239700.1  cat eye syndrome critical region protein 2 homolog isoform X7

      See identical proteins and their annotated locations for XP_011239700.1

      Conserved Domains (1) summary
      cd05509
      Location:418518
      Bromo_gcn5_like; Bromodomain; Gcn5_like subfamily. Gcn5p is a histone acetyltransferase (HAT) which mediates acetylation of histones at lysine residues; such acetylation is generally correlated with the activation of transcription. Bromodomains are 110 amino acid long ...
    3. XM_036166255.1XP_036022148.1  cat eye syndrome critical region protein 2 homolog isoform X8

      Conserved Domains (2) summary
      cd05509
      Location:418518
      Bromo_gcn5_like; Bromodomain; Gcn5_like subfamily. Gcn5p is a histone acetyltransferase (HAT) which mediates acetylation of histones at lysine residues; such acetylation is generally correlated with the activation of transcription. Bromodomains are 110 amino acid long ...
      pfam03154
      Location:567740
      Atrophin-1; Atrophin-1 family
    4. XM_030255488.2XP_030111348.1  cat eye syndrome critical region protein 2 homolog isoform X4

      Conserved Domains (2) summary
      cd05509
      Location:418518
      Bromo_gcn5_like; Bromodomain; Gcn5_like subfamily. Gcn5p is a histone acetyltransferase (HAT) which mediates acetylation of histones at lysine residues; such acetylation is generally correlated with the activation of transcription. Bromodomains are 110 amino acid long ...
      PHA03247
      Location:5651002
      PHA03247; large tegument protein UL36; Provisional
    5. XM_036166256.1XP_036022149.1  cat eye syndrome critical region protein 2 homolog isoform X9

      Conserved Domains (1) summary
      cd05509
      Location:418518
      Bromo_gcn5_like; Bromodomain; Gcn5_like subfamily. Gcn5p is a histone acetyltransferase (HAT) which mediates acetylation of histones at lysine residues; such acetylation is generally correlated with the activation of transcription. Bromodomains are 110 amino acid long ...
    6. XM_011241396.3XP_011239698.1  cat eye syndrome critical region protein 2 homolog isoform X2

      See identical proteins and their annotated locations for XP_011239698.1

      Conserved Domains (2) summary
      cd05509
      Location:390490
      Bromo_gcn5_like; Bromodomain; Gcn5_like subfamily. Gcn5p is a histone acetyltransferase (HAT) which mediates acetylation of histones at lysine residues; such acetylation is generally correlated with the activation of transcription. Bromodomains are 110 amino acid long ...
      PHA03247
      Location:5301003
      PHA03247; large tegument protein UL36; Provisional
    7. XM_030255487.2XP_030111347.1  cat eye syndrome critical region protein 2 homolog isoform X3

      Conserved Domains (2) summary
      cd05509
      Location:390490
      Bromo_gcn5_like; Bromodomain; Gcn5_like subfamily. Gcn5p is a histone acetyltransferase (HAT) which mediates acetylation of histones at lysine residues; such acetylation is generally correlated with the activation of transcription. Bromodomains are 110 amino acid long ...
      PHA03247
      Location:5301002
      PHA03247; large tegument protein UL36; Provisional
    8. XM_036166254.1XP_036022147.1  cat eye syndrome critical region protein 2 homolog isoform X5

      Conserved Domains (2) summary
      cd05509
      Location:390490
      Bromo_gcn5_like; Bromodomain; Gcn5_like subfamily. Gcn5p is a histone acetyltransferase (HAT) which mediates acetylation of histones at lysine residues; such acetylation is generally correlated with the activation of transcription. Bromodomains are 110 amino acid long ...
      PHA03247
      Location:537975
      PHA03247; large tegument protein UL36; Provisional
    9. XM_011241397.3XP_011239699.1  cat eye syndrome critical region protein 2 homolog isoform X6

      See identical proteins and their annotated locations for XP_011239699.1

      Conserved Domains (2) summary
      cd05509
      Location:277377
      Bromo_gcn5_like; Bromodomain; Gcn5_like subfamily. Gcn5p is a histone acetyltransferase (HAT) which mediates acetylation of histones at lysine residues; such acetylation is generally correlated with the activation of transcription. Bromodomains are 110 amino acid long ...
      PHA03247
      Location:417890
      PHA03247; large tegument protein UL36; Provisional
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