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    B4galnt3 beta-1,4-N-acetyl-galactosaminyl transferase 3 [ Mus musculus (house mouse) ]

    Gene ID: 330406, updated on 23-Jun-2021

    Summary

    Official Symbol
    B4galnt3provided by MGI
    Official Full Name
    beta-1,4-N-acetyl-galactosaminyl transferase 3provided by MGI
    Primary source
    MGI:MGI:3041155
    See related
    Ensembl:ENSMUSG00000041372
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    AB114826; B4GalNAcT3; C330047A21
    Expression
    Biased expression in colon adult (RPKM 15.3), kidney adult (RPKM 10.3) and 7 other tissues See more
    Orthologs
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    Genomic context

    See B4galnt3 in Genome Data Viewer
    Location:
    6; 6 F1
    Exon count:
    22
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 6 NC_000072.7 (120177714..120271879, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 6 NC_000072.6 (120200753..120294917, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 6 NC_000072.5 (120153828..120244577, complement)

    Chromosome 6 - NC_000072.7Genomic Context describing neighboring genes Neighboring gene WNK lysine deficient protein kinase 1 Neighboring gene microRNA 706 Neighboring gene ninjurin 2 Neighboring gene predicted gene, 25327 Neighboring gene coiled-coil domain containing 77 Neighboring gene lysine (K)-specific demethylase 5A Neighboring gene predicted gene, 24592

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (1) 

    General gene information

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables N-acetyl-beta-glucosaminyl-glycoprotein 4-beta-N-acetylgalactosaminyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
     
    enables acetylgalactosaminyltransferase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    enables acetylgalactosaminyltransferase activity ISO
    Inferred from Sequence Orthology
    more info
     
    enables acetylgalactosaminyltransferase activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    PubMed 
    enables transferase activity IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    located_in Golgi apparatus ISO
    Inferred from Sequence Orthology
    more info
     
    located_in Golgi cisterna membrane IEA
    Inferred from Electronic Annotation
    more info
     
    located_in integral component of membrane IEA
    Inferred from Electronic Annotation
    more info
     
    located_in intracellular membrane-bounded organelle ISO
    Inferred from Sequence Orthology
    more info
     
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    beta-1,4-N-acetylgalactosaminyltransferase 3
    Names
    N-acetyl-beta-glucosaminyl-glycoprotein 4-beta-N-acetylgalactosaminyltransferase 2
    NGalNAc-T2
    beta 1,4-N-acetylgalactosaminyltransferase-transferase 3
    beta 1,4-N-acetylgalactosaminyltransferase-transferase-III
    beta-1,4-N-acetylgalactosaminyltransferase III
    beta4GalNAc-T3
    beta4GalNAcT3
    NP_942585.1
    XP_006506379.1
    XP_006506381.1
    XP_011239697.1
    XP_017177147.1

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_198884.2NP_942585.1  beta-1,4-N-acetylgalactosaminyltransferase 3

      See identical proteins and their annotated locations for NP_942585.1

      Status: VALIDATED

      Source sequence(s)
      AC155720, AC156951
      Consensus CDS
      CCDS20480.1
      UniProtKB/Swiss-Prot
      Q6L8S8
      Related
      ENSMUSP00000058253.8, ENSMUST00000057283.8
      Conserved Domains (2) summary
      pfam07691
      Location:143277
      PA14; PA14 domain
      cl11394
      Location:776972
      Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000072.7 Reference GRCm39 C57BL/6J

      Range
      120177714..120271879 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006506316.5XP_006506379.1  beta-1,4-N-acetylgalactosaminyltransferase 3 isoform X1

      UniProtKB/TrEMBL
      A0A1D5RMF7
      Related
      ENSMUSP00000148759.2, ENSMUST00000212457.2
      Conserved Domains (2) summary
      smart00758
      Location:140277
      PA14; domain in bacterial beta-glucosidases other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins, and bacterial toxins
      cl11394
      Location:654971
      Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold
    2. XM_017321658.1XP_017177147.1  beta-1,4-N-acetylgalactosaminyltransferase 3 isoform X3

      Conserved Domains (1) summary
      cl11394
      Location:365682
      Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold
    3. XM_011241395.2XP_011239697.1  beta-1,4-N-acetylgalactosaminyltransferase 3 isoform X2

      Conserved Domains (2) summary
      smart00758
      Location:117254
      PA14; domain in bacterial beta-glucosidases other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins, and bacterial toxins
      cl11394
      Location:632949
      Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold
    4. XM_006506318.5XP_006506381.1  beta-1,4-N-acetylgalactosaminyltransferase 3 isoform X4

      Conserved Domains (1) summary
      smart00758
      Location:140277
      PA14; domain in bacterial beta-glucosidases other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins, and bacterial toxins
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