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    Nol4l nucleolar protein 4-like [ Mus musculus (house mouse) ]

    Gene ID: 329540, updated on 31-Jan-2019

    Summary

    Official Symbol
    Nol4lprovided by MGI
    Official Full Name
    nucleolar protein 4-likeprovided by MGI
    Primary source
    MGI:MGI:1918765
    See related
    Ensembl:ENSMUSG00000061411
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Gm1636; AI429157; 4931410H15; 8430427H17Rik
    Expression
    Broad expression in testis adult (RPKM 47.6), whole brain E14.5 (RPKM 15.1) and 19 other tissues See more
    Orthologs

    Genomic context

    See Nol4l in Genome Data Viewer
    Location:
    2; 2 H1
    Exon count:
    22
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 2 NC_000068.7 (153407461..153529971, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 2 NC_000068.6 (153233197..153355707, complement)

    Chromosome 2 - NC_000068.7Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA 2500004C02 gene Neighboring gene additional sex combs like 1 Neighboring gene ATP synthase subunit d, mitochondrial-like Neighboring gene RIKEN cDNA 4930404H24 gene Neighboring gene COMM domain containing 7 Neighboring gene DNA methyltransferase 3B

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (2) 

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Process Evidence Code Pubs
    biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    cytosol ISO
    Inferred from Sequence Orthology
    more info
     
    nucleoplasm ISO
    Inferred from Sequence Orthology
    more info
     

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001001986.2NP_001001986.2  nucleolar protein 4-like isoform 1

      See identical proteins and their annotated locations for NP_001001986.2

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) differs in the 5' UTR and coding sequence compared to variant 2. The resulting isoform (1) is shorter at the N-terminus compared to isoform 2.
      Source sequence(s)
      AW457584, BB850016, BC094234
      Consensus CDS
      CCDS50757.1
      UniProtKB/TrEMBL
      Q3TZG8, Q52KQ8
      Related
      ENSMUSP00000105407.1, ENSMUST00000109784.1
    2. NM_001134300.2NP_001127772.1  nucleolar protein 4-like isoform 2

      See identical proteins and their annotated locations for NP_001127772.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) represents the longer transcript and encodes the longer isoform (2).
      Source sequence(s)
      AK147524, AW457584, BC094234
      Consensus CDS
      CCDS50758.1
      UniProtKB/TrEMBL
      Q3UH85, Q52KQ8
      Related
      ENSMUSP00000036571.7, ENSMUST00000035346.13

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000068.7 Reference GRCm38.p4 C57BL/6J

      Range
      153407461..153529971 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006499779.2XP_006499842.2  nucleolar protein 4-like isoform X1

    2. XM_011239629.1XP_011237931.1  nucleolar protein 4-like isoform X5

      See identical proteins and their annotated locations for XP_011237931.1

    3. XM_011239633.2XP_011237935.1  nucleolar protein 4-like isoform X5

      See identical proteins and their annotated locations for XP_011237935.1

    4. XM_011239632.1XP_011237934.1  nucleolar protein 4-like isoform X5

      See identical proteins and their annotated locations for XP_011237934.1

    5. XM_011239634.1XP_011237936.1  nucleolar protein 4-like isoform X7

      See identical proteins and their annotated locations for XP_011237936.1

    6. XM_011239630.1XP_011237932.1  nucleolar protein 4-like isoform X5

      See identical proteins and their annotated locations for XP_011237932.1

    7. XM_011239631.1XP_011237933.1  nucleolar protein 4-like isoform X5

      See identical proteins and their annotated locations for XP_011237933.1

    8. XM_011239636.1XP_011237938.1  nucleolar protein 4-like isoform X8

    9. XM_006499781.3XP_006499844.1  nucleolar protein 4-like isoform X3

    10. XM_006499780.3XP_006499843.1  nucleolar protein 4-like isoform X2

    11. XM_006499784.3XP_006499847.1  nucleolar protein 4-like isoform X4

      See identical proteins and their annotated locations for XP_006499847.1

    12. XM_006499783.3XP_006499846.1  nucleolar protein 4-like isoform X4

      See identical proteins and their annotated locations for XP_006499846.1

    13. XM_006499787.3XP_006499850.1  nucleolar protein 4-like isoform X6

      See identical proteins and their annotated locations for XP_006499850.1

      UniProtKB/TrEMBL
      Q3TZG8
    14. XM_006499786.3XP_006499849.1  nucleolar protein 4-like isoform X6

      See identical proteins and their annotated locations for XP_006499849.1

      UniProtKB/TrEMBL
      Q3TZG8
    15. XM_017319054.1XP_017174543.1  nucleolar protein 4-like isoform X6

      UniProtKB/TrEMBL
      Q3TZG8
    16. XM_006499788.3XP_006499851.1  nucleolar protein 4-like isoform X6

      See identical proteins and their annotated locations for XP_006499851.1

      UniProtKB/TrEMBL
      Q3TZG8

    RNA

    1. XR_001783139.1 RNA Sequence

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