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    Med13 mediator complex subunit 13 [ Mus musculus (house mouse) ]

    Gene ID: 327987, updated on 16-Feb-2019

    Summary

    Official Symbol
    Med13provided by MGI
    Official Full Name
    mediator complex subunit 13provided by MGI
    Primary source
    MGI:MGI:3029632
    See related
    Ensembl:ENSMUSG00000034297
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Thrap1; Trap240; D030023K18; 1110067M05Rik
    Expression
    Ubiquitous expression in thymus adult (RPKM 6.7), whole brain E14.5 (RPKM 6.6) and 28 other tissues See more
    Orthologs

    Genomic context

    See Med13 in Genome Data Viewer
    Location:
    11; 11 C
    Exon count:
    30
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 11 NC_000077.6 (86265715..86357525, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 11 NC_000077.5 (86079217..86171027, complement)

    Chromosome 11 - NC_000077.6Genomic Context describing neighboring genes Neighboring gene BRCA1 interacting protein C-terminal helicase 1, opposite strand Neighboring gene integrator complex subunit 2 Neighboring gene nuclear encoded tRNA glutamine 2 (anticodon TTG) Neighboring gene predicted gene, 38937 Neighboring gene predicted gene, 33528

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    Pathways from BioSystems

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    thyroid hormone receptor binding ISO
    Inferred from Sequence Orthology
    more info
     
    transcription coactivator activity ISO
    Inferred from Sequence Orthology
    more info
     
    transcription coregulator activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    transcription coregulator activity ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    mediator complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    mediator complex IDA
    Inferred from Direct Assay
    more info
    PubMed 
    mediator complex ISO
    Inferred from Sequence Orthology
    more info
     
    nucleus ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    mediator of RNA polymerase II transcription subunit 13
    Names
    Zmediator complex subunit 13
    mediator of RNA polymerase II transcription, subunit 13
    thyroid hormone receptor associated protein 1
    thyroid hormone receptor associated protein, 240 kDa subunit
    thyroid hormone receptor-associated protein complex 240 kDa component

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001080931.2NP_001074400.1  mediator of RNA polymerase II transcription subunit 13

      See identical proteins and their annotated locations for NP_001074400.1

      Status: VALIDATED

      Source sequence(s)
      AL592065, AL596256
      Consensus CDS
      CCDS36267.1
      UniProtKB/Swiss-Prot
      Q5SWW4
      Related
      ENSMUSP00000044268.8, ENSMUST00000043624.8
      Conserved Domains (2) summary
      pfam06333
      Location:16372158
      Med13_C; Mediator complex subunit 13 C-terminal
      pfam11597
      Location:14384
      Med13_N; Mediator complex subunit 13 N-terminal

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000077.6 Reference GRCm38.p4 C57BL/6J

      Range
      86265715..86357525 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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