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    Cdv3 carnitine deficiency-associated gene expressed in ventricle 3 [ Mus musculus (house mouse) ]

    Gene ID: 321022, updated on 31-Jan-2019

    Summary

    Official Symbol
    Cdv3provided by MGI
    Official Full Name
    carnitine deficiency-associated gene expressed in ventricle 3provided by MGI
    Primary source
    MGI:MGI:2448759
    See related
    Ensembl:ENSMUSG00000032803
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    TPP36; C79446; 2510010F10Rik; C230084J24Rik
    Expression
    Ubiquitous expression in testis adult (RPKM 32.7), CNS E11.5 (RPKM 31.8) and 28 other tissues See more
    Orthologs

    Genomic context

    See Cdv3 in Genome Data Viewer
    Location:
    9; 9 F1
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 9 NC_000075.6 (103353102..103365835, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 9 NC_000075.5 (103255432..103268110, complement)

    Chromosome 9 - NC_000075.6Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA 1300017J02 gene Neighboring gene predicted gene, 31701 Neighboring gene topoisomerase (DNA) II binding protein 1 Neighboring gene RIKEN cDNA 5830418P13 gene Neighboring gene beaded filament structural protein 2, phakinin Neighboring gene predicted gene 16252 Neighboring gene transmembrane protein 108

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    cytoplasm IDA
    Inferred from Direct Assay
    more info
    PubMed 
    cytosol ISO
    Inferred from Sequence Orthology
    more info
     
    NOT nucleus IDA
    Inferred from Direct Assay
    more info
    PubMed 
    plasma membrane ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    protein CDV3
    Names
    carnitine deficiency-associated protein 3
    carnitine deficiency-associated protein CDV3A
    carnitine deficiency-associated protein CDV3B
    tyrosine-phosphorylated protein 36

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001134426.1NP_001127898.1  protein CDV3 isoform c

      Status: VALIDATED

      Description
      Transcript Variant: This variant (3) uses an alternate in-frame splice site in the 3' coding region, compared to variant 1, resulting in a shorter protein (isoform c).
      Source sequence(s)
      AC122747
      Consensus CDS
      CCDS81064.1
      UniProtKB/TrEMBL
      A0A087WNP6
      Related
      ENSMUSP00000139440.1, ENSMUST00000189896.1
      Conserved Domains (1) summary
      pfam15359
      Location:106224
      CDV3; Carnitine deficiency-associated protein 3
    2. NM_001134427.1NP_001127899.1  protein CDV3 isoform d

      Status: VALIDATED

      Description
      Transcript Variant: This variant (4) uses an alternate exon in the 5' region, compared to variant 1, resulting in a protein with a shorter N-terminus (isoform d).
      Source sequence(s)
      AC122747
      Consensus CDS
      CCDS52902.1
      UniProtKB/TrEMBL
      F8WGL9
      Related
      ENSMUSP00000112216.2, ENSMUST00000116517.8
      Conserved Domains (1) summary
      pfam15359
      Location:197
      CDV3; Carnitine deficiency-associated protein 3
    3. NM_175565.3NP_780774.1  protein CDV3 isoform a

      See identical proteins and their annotated locations for NP_780774.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant represents the longest transcript and encodes the longest isoform (a), also known as CDV3A.
      Source sequence(s)
      AC122747, AF215660, AI851067
      Consensus CDS
      CCDS40748.1
      UniProtKB/Swiss-Prot
      Q4VAA2
      Related
      ENSMUSP00000072101.6, ENSMUST00000072249.12
      Conserved Domains (1) summary
      pfam15359
      Location:106224
      CDV3; Carnitine deficiency-associated protein 3
    4. NM_175833.2NP_787027.1  protein CDV3 isoform b

      See identical proteins and their annotated locations for NP_787027.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) uses an alternate in-frame splice site in the 3' coding region, compared to variant 1, resulting in a longer protein (isoform b), also known as CDV3B.
      Source sequence(s)
      AC122747, AI851067, BC052770
      Consensus CDS
      CCDS23454.1
      UniProtKB/Swiss-Prot
      Q4VAA2
      Related
      ENSMUSP00000044420.3, ENSMUST00000035484.10
      Conserved Domains (1) summary
      pfam15359
      Location:106224
      CDV3; Carnitine deficiency-associated protein 3

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000075.6 Reference GRCm38.p4 C57BL/6J

      Range
      103353102..103365835 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006511756.1XP_006511819.1  protein CDV3 isoform X1

      Conserved Domains (1) summary
      pfam15359
      Location:106224
      CDV3; Carnitine deficiency-associated protein 3
    2. XM_006511758.3XP_006511821.1  protein CDV3 isoform X2

      Related
      ENSMUSP00000140900.1, ENSMUST00000190226.6
      Conserved Domains (1) summary
      pfam15359
      Location:197
      CDV3; Carnitine deficiency-associated protein 3
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