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    Fastkd1 FAST kinase domains 1 [ Mus musculus (house mouse) ]

    Gene ID: 320720, updated on 27-Jan-2018

    Summary

    Official Symbol
    Fastkd1provided by MGI
    Official Full Name
    FAST kinase domains 1provided by MGI
    Primary source
    MGI:MGI:2444596
    See related
    Ensembl:ENSMUSG00000027086 Vega:OTTMUSG00000013008
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    mKIAA1800; 5330408N05Rik
    Expression
    Ubiquitous expression in CNS E18 (RPKM 4.3), CNS E11.5 (RPKM 3.6) and 27 other tissues See more
    Orthologs

    Genomic context

    See Fastkd1 in Genome Data Viewer
    Location:
    2; 2 C2
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 2 NC_000068.7 (69686820..69712606, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 2 NC_000068.6 (69524877..69550663, complement)

    Chromosome 2 - NC_000068.7Genomic Context describing neighboring genes Neighboring gene Bardet-Biedl syndrome 5 (human) Neighboring gene kelch-like 41 Neighboring gene peptidyl-prolyl isomerase G (cyclophilin G) Neighboring gene coiled-coil domain containing 173 Neighboring gene 60S ribosomal protein L13-like

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    General gene information

    Markers

    Homology

    Clone Names

    • KIAA1800

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    protein kinase activity IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    cellular respiration ISS
    Inferred from Sequence or Structural Similarity
    more info
    PubMed 
    mitochondrial RNA metabolic process ISO
    Inferred from Sequence Orthology
    more info
     
    regulation of mitochondrial mRNA stability ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    mitochondrion ISO
    Inferred from Sequence Orthology
    more info
     
    mitochondrion ISS
    Inferred from Sequence or Structural Similarity
    more info
    PubMed 

    General protein information

    Preferred Names
    FAST kinase domain-containing protein 1, mitochondrial

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_177244.3NP_796218.2  FAST kinase domain-containing protein 1, mitochondrial

      See identical proteins and their annotated locations for NP_796218.2

      Status: PROVISIONAL

      Source sequence(s)
      BC075689
      Consensus CDS
      CCDS16096.1
      UniProtKB/Swiss-Prot
      Q6DI86
      Related
      ENSMUSP00000072896.6, OTTMUSP00000014019, ENSMUST00000073152.12, OTTMUST00000031351
      Conserved Domains (3) summary
      smart00952
      Location:763821
      RAP; This domain is found in various eukaryotic species, particularly in apicomplexans
      pfam06743
      Location:560628
      FAST_1; FAST kinase-like protein, subdomain 1
      pfam08368
      Location:648729
      FAST_2; FAST kinase-like protein, subdomain 2

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000068.7 Reference GRCm38.p4 C57BL/6J

      Range
      69686820..69712606 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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