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    Cobll1 Cobl-like 1 [ Mus musculus (house mouse) ]

    Gene ID: 319876, updated on 31-Jan-2019

    Summary

    Official Symbol
    Cobll1provided by MGI
    Official Full Name
    Cobl-like 1provided by MGI
    Primary source
    MGI:MGI:2442894
    See related
    Ensembl:ENSMUSG00000034903
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Coblr1; 1810047P18Rik; D430044D16Rik
    Expression
    Broad expression in adrenal adult (RPKM 24.9), kidney adult (RPKM 14.3) and 20 other tissues See more
    Orthologs

    Genomic context

    See Cobll1 in Genome Data Viewer
    Location:
    2; 2 C1.3
    Exon count:
    21
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 2 NC_000068.7 (65088339..65239481, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 2 NC_000068.6 (64926396..65076683, complement)

    Chromosome 2 - NC_000068.7Genomic Context describing neighboring genes Neighboring gene predicted gene 13578 Neighboring gene growth factor receptor bound protein 14 Neighboring gene predicted gene 13594 Neighboring gene glyceraldehyde-3-phosphate dehydrogenase pseudogene Neighboring gene predicted gene 13593

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    actin monomer binding IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    cordon-bleu protein-like 1
    Names
    cobl-related 1
    cobl-related protein 1

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001363076.1NP_001350005.1  cordon-bleu protein-like 1 isoform 3

      Status: VALIDATED

      Description
      Transcript Variant: This variant (3) represents the longest transcript and encodes the longest isoform (3).
      Source sequence(s)
      AL929129, AL929132, AL935171, BX321909
      Conserved Domains (2) summary
      pfam09469
      Location:188266
      Cobl; Cordon-bleu ubiquitin-like domain
      cl26464
      Location:9051176
      Atrophin-1; Atrophin-1 family
    2. NM_001363077.1NP_001350006.1  cordon-bleu protein-like 1 isoform 4

      Status: VALIDATED

      Source sequence(s)
      AL929129, AL929132, AL935171
      Conserved Domains (2) summary
      pfam09469
      Location:156234
      Cobl; Cordon-bleu ubiquitin-like domain
      cl26464
      Location:8731144
      Atrophin-1; Atrophin-1 family
    3. NM_027225.2NP_081501.1  cordon-bleu protein-like 1 isoform 2

      Status: VALIDATED

      Source sequence(s)
      AL929129, AL929132, AL935171
      Consensus CDS
      CCDS50595.1
      UniProtKB/Swiss-Prot
      Q3UMF0
      Related
      ENSMUSP00000088412.3, ENSMUST00000090896.9
      Conserved Domains (2) summary
      pfam09469
      Location:156234
      Cobl; Cordon-bleu ubiquitin-like domain
      cl00155
      Location:72141
      UBQ; Ubiquitin-like proteins
    4. NM_177025.6NP_795999.2  cordon-bleu protein-like 1 isoform 1

      See identical proteins and their annotated locations for NP_795999.2

      Status: VALIDATED

      Source sequence(s)
      AL929129, AL929132, AL935171
      Consensus CDS
      CCDS16072.1
      UniProtKB/Swiss-Prot
      Q3UMF0
      UniProtKB/TrEMBL
      B1AZ15
      Related
      ENSMUSP00000099787.1, ENSMUST00000102726.7
      Conserved Domains (3) summary
      pfam09528
      Location:286840
      Ehrlichia_rpt; Ehrlichia tandem repeat (Ehrlichia_rpt)
      pfam09469
      Location:156234
      Cobl; Cordon-bleu ubiquitin-like domain
      cl00155
      Location:72141
      UBQ; Ubiquitin-like proteins

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000068.7 Reference GRCm38.p4 C57BL/6J

      Range
      65088339..65239481 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006499717.2XP_006499780.1  cordon-bleu protein-like 1 isoform X9

      Conserved Domains (3) summary
      pfam09528
      Location:298853
      Ehrlichia_rpt; Ehrlichia tandem repeat (Ehrlichia_rpt)
      pfam09469
      Location:155231
      Cobl; Cordon-bleu ubiquitin-like domain
      cl00155
      Location:71140
      UBQ; Ubiquitin-like proteins
    2. XM_006499716.3XP_006499779.1  cordon-bleu protein-like 1 isoform X8

      Conserved Domains (3) summary
      pfam09528
      Location:299854
      Ehrlichia_rpt; Ehrlichia tandem repeat (Ehrlichia_rpt)
      pfam09469
      Location:156232
      Cobl; Cordon-bleu ubiquitin-like domain
      cl00155
      Location:72141
      UBQ; Ubiquitin-like proteins
    3. XM_006499722.3XP_006499785.1  cordon-bleu protein-like 1 isoform X14

      Conserved Domains (2) summary
      pfam09469
      Location:175253
      Cobl; Cordon-bleu ubiquitin-like domain
      cl00155
      Location:91160
      UBQ; Ubiquitin-like proteins
    4. XM_006499714.3XP_006499777.1  cordon-bleu protein-like 1 isoform X6

      Conserved Domains (3) summary
      pfam09528
      Location:305860
      Ehrlichia_rpt; Ehrlichia tandem repeat (Ehrlichia_rpt)
      pfam09469
      Location:175253
      Cobl; Cordon-bleu ubiquitin-like domain
      cl00155
      Location:91160
      UBQ; Ubiquitin-like proteins
    5. XM_006499711.3XP_006499774.1  cordon-bleu protein-like 1 isoform X2

      Conserved Domains (3) summary
      pfam09528
      Location:318873
      Ehrlichia_rpt; Ehrlichia tandem repeat (Ehrlichia_rpt)
      pfam09469
      Location:175251
      Cobl; Cordon-bleu ubiquitin-like domain
      cl00155
      Location:91160
      UBQ; Ubiquitin-like proteins
    6. XM_006499715.3XP_006499778.1  cordon-bleu protein-like 1 isoform X7

      Conserved Domains (3) summary
      pfam09528
      Location:306860
      Ehrlichia_rpt; Ehrlichia tandem repeat (Ehrlichia_rpt)
      pfam09469
      Location:176254
      Cobl; Cordon-bleu ubiquitin-like domain
      cl00155
      Location:92161
      UBQ; Ubiquitin-like proteins
    7. XM_006499713.3XP_006499776.1  cordon-bleu protein-like 1 isoform X5

      Conserved Domains (3) summary
      pfam09528
      Location:306861
      Ehrlichia_rpt; Ehrlichia tandem repeat (Ehrlichia_rpt)
      pfam09469
      Location:176254
      Cobl; Cordon-bleu ubiquitin-like domain
      cl00155
      Location:92161
      UBQ; Ubiquitin-like proteins
    8. XM_006499718.3XP_006499781.1  cordon-bleu protein-like 1 isoform X10

      Conserved Domains (2) summary
      pfam09469
      Location:176252
      Cobl; Cordon-bleu ubiquitin-like domain
      cl00155
      Location:92161
      UBQ; Ubiquitin-like proteins
    9. XM_006499712.3XP_006499775.1  cordon-bleu protein-like 1 isoform X3

      Conserved Domains (3) summary
      pfam09528
      Location:319873
      Ehrlichia_rpt; Ehrlichia tandem repeat (Ehrlichia_rpt)
      pfam09469
      Location:176252
      Cobl; Cordon-bleu ubiquitin-like domain
      cl00155
      Location:92161
      UBQ; Ubiquitin-like proteins
    10. XM_006499710.3XP_006499773.1  cordon-bleu protein-like 1 isoform X1

      Conserved Domains (3) summary
      pfam09528
      Location:319874
      Ehrlichia_rpt; Ehrlichia tandem repeat (Ehrlichia_rpt)
      pfam09469
      Location:176252
      Cobl; Cordon-bleu ubiquitin-like domain
      cl00155
      Location:92161
      UBQ; Ubiquitin-like proteins
    11. XM_006499721.3XP_006499784.1  cordon-bleu protein-like 1 isoform X13

      Conserved Domains (2) summary
      pfam09469
      Location:176254
      Cobl; Cordon-bleu ubiquitin-like domain
      cl00155
      Location:92161
      UBQ; Ubiquitin-like proteins
    12. XM_017318998.1XP_017174487.1  cordon-bleu protein-like 1 isoform X15

      UniProtKB/Swiss-Prot
      Q3UMF0
      Related
      ENSMUSP00000108049.1, ENSMUST00000112430.7
    13. XM_017318997.1XP_017174486.1  cordon-bleu protein-like 1 isoform X9

      Conserved Domains (3) summary
      pfam09528
      Location:298853
      Ehrlichia_rpt; Ehrlichia tandem repeat (Ehrlichia_rpt)
      pfam09469
      Location:155231
      Cobl; Cordon-bleu ubiquitin-like domain
      cl00155
      Location:71140
      UBQ; Ubiquitin-like proteins
    14. XM_017318995.1XP_017174484.1  cordon-bleu protein-like 1 isoform X8

      Conserved Domains (3) summary
      pfam09528
      Location:299854
      Ehrlichia_rpt; Ehrlichia tandem repeat (Ehrlichia_rpt)
      pfam09469
      Location:156232
      Cobl; Cordon-bleu ubiquitin-like domain
      cl00155
      Location:72141
      UBQ; Ubiquitin-like proteins
    15. XM_006499723.3XP_006499786.1  cordon-bleu protein-like 1 isoform X16

      See identical proteins and their annotated locations for XP_006499786.1

      Conserved Domains (3) summary
      pfam09528
      Location:235790
      Ehrlichia_rpt; Ehrlichia tandem repeat (Ehrlichia_rpt)
      pfam09469
      Location:92168
      Cobl; Cordon-bleu ubiquitin-like domain
      cl00155
      Location:877
      UBQ; Ubiquitin-like proteins
    16. XM_006499720.2XP_006499783.1  cordon-bleu protein-like 1 isoform X12

      Conserved Domains (3) summary
      pfam09528
      Location:275830
      Ehrlichia_rpt; Ehrlichia tandem repeat (Ehrlichia_rpt)
      pfam09469
      Location:132208
      Cobl; Cordon-bleu ubiquitin-like domain
      cl00155
      Location:48117
      UBQ; Ubiquitin-like proteins
    17. XM_006499719.2XP_006499782.1  cordon-bleu protein-like 1 isoform X11

      Conserved Domains (3) summary
      pfam09528
      Location:276831
      Ehrlichia_rpt; Ehrlichia tandem repeat (Ehrlichia_rpt)
      pfam09469
      Location:133209
      Cobl; Cordon-bleu ubiquitin-like domain
      cl00155
      Location:49118
      UBQ; Ubiquitin-like proteins
    18. XM_006499724.2XP_006499787.1  cordon-bleu protein-like 1 isoform X16

      See identical proteins and their annotated locations for XP_006499787.1

      Conserved Domains (3) summary
      pfam09528
      Location:235790
      Ehrlichia_rpt; Ehrlichia tandem repeat (Ehrlichia_rpt)
      pfam09469
      Location:92168
      Cobl; Cordon-bleu ubiquitin-like domain
      cl00155
      Location:877
      UBQ; Ubiquitin-like proteins
    19. XM_011239598.2XP_011237900.1  cordon-bleu protein-like 1 isoform X4

      Conserved Domains (3) summary
      pfam09528
      Location:319874
      Ehrlichia_rpt; Ehrlichia tandem repeat (Ehrlichia_rpt)
      pfam09469
      Location:176252
      Cobl; Cordon-bleu ubiquitin-like domain
      cl00155
      Location:92161
      UBQ; Ubiquitin-like proteins
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