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    Cobll1 Cobl-like 1 [ Mus musculus (house mouse) ]

    Gene ID: 319876, updated on 16-Oct-2021

    Summary

    Official Symbol
    Cobll1provided by MGI
    Official Full Name
    Cobl-like 1provided by MGI
    Primary source
    MGI:MGI:2442894
    See related
    Ensembl:ENSMUSG00000034903
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Coblr1; 1810047P18Rik; D430044D16Rik
    Expression
    Broad expression in adrenal adult (RPKM 24.9), kidney adult (RPKM 14.3) and 20 other tissues See more
    Orthologs
    NEW
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    Try the new Transcript table

    Genomic context

    See Cobll1 in Genome Data Viewer
    Location:
    2; 2 C1.3
    Exon count:
    21
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (64918683..65069742, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (65088339..65239398, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 2 NC_000068.6 (64926396..65076683, complement)

    Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene predicted gene 13578 Neighboring gene growth factor receptor bound protein 14 Neighboring gene U7 small nuclear RNA Neighboring gene predicted gene 13594 Neighboring gene glyceraldehyde-3-phosphate dehydrogenase pseudogene Neighboring gene predicted gene 13593

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables actin monomer binding IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    cordon-bleu protein-like 1
    Names
    cobl-related 1
    cobl-related protein 1

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001363076.1NP_001350005.1  cordon-bleu protein-like 1 isoform 3

      Status: VALIDATED

      Description
      Transcript Variant: This variant (3) represents the longest transcript and encodes the longest isoform (3).
      Source sequence(s)
      AL929129, AL929132, AL935171, BX321909
      Conserved Domains (2) summary
      pfam09469
      Location:188266
      Cobl; Cordon-bleu ubiquitin-like domain
      cl26464
      Location:9051176
      Atrophin-1; Atrophin-1 family
    2. NM_001363077.1NP_001350006.1  cordon-bleu protein-like 1 isoform 4

      Status: VALIDATED

      Source sequence(s)
      AL929129, AL929132, AL935171
      Consensus CDS
      CCDS89492.1
      Related
      ENSMUSP00000108050.2, ENSMUST00000112431.8
      Conserved Domains (2) summary
      pfam09469
      Location:156234
      Cobl; Cordon-bleu ubiquitin-like domain
      cl26464
      Location:8731144
      Atrophin-1; Atrophin-1 family
    3. NM_027225.2NP_081501.1  cordon-bleu protein-like 1 isoform 2

      Status: VALIDATED

      Source sequence(s)
      AL929129, AL929132, AL935171
      Consensus CDS
      CCDS50595.1
      UniProtKB/Swiss-Prot
      Q3UMF0
      Related
      ENSMUSP00000088412.4, ENSMUST00000090896.10
      Conserved Domains (2) summary
      pfam09469
      Location:156234
      Cobl; Cordon-bleu ubiquitin-like domain
      cl00155
      Location:72141
      UBQ; Ubiquitin-like proteins
    4. NM_177025.6NP_795999.2  cordon-bleu protein-like 1 isoform 1

      See identical proteins and their annotated locations for NP_795999.2

      Status: VALIDATED

      Source sequence(s)
      AL929129, AL929132, AL935171
      Consensus CDS
      CCDS16072.1
      UniProtKB/Swiss-Prot
      Q3UMF0
      UniProtKB/TrEMBL
      B1AZ15
      Related
      ENSMUSP00000099787.2, ENSMUST00000102726.8
      Conserved Domains (3) summary
      pfam09528
      Location:286840
      Ehrlichia_rpt; Ehrlichia tandem repeat (Ehrlichia_rpt)
      pfam09469
      Location:156234
      Cobl; Cordon-bleu ubiquitin-like domain
      cl00155
      Location:72141
      UBQ; Ubiquitin-like proteins

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000068.8 Reference GRCm39 C57BL/6J

      Range
      64918683..65069742 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006499717.3XP_006499780.1  cordon-bleu protein-like 1 isoform X9

      Conserved Domains (2) summary
      PHA03247
      Location:8851156
      PHA03247; large tegument protein UL36; Provisional
      pfam09469
      Location:155231
      Cobl; Cordon-bleu ubiquitin-like domain
    2. XM_006499716.5XP_006499779.1  cordon-bleu protein-like 1 isoform X8

      Conserved Domains (2) summary
      PHA03247
      Location:8861157
      PHA03247; large tegument protein UL36; Provisional
      pfam09469
      Location:156232
      Cobl; Cordon-bleu ubiquitin-like domain
    3. XM_011239598.4XP_011237900.1  cordon-bleu protein-like 1 isoform X4

      Conserved Domains (2) summary
      PHA03247
      Location:9061177
      PHA03247; large tegument protein UL36; Provisional
      pfam09469
      Location:176252
      Cobl; Cordon-bleu ubiquitin-like domain
    4. XM_006499711.5XP_006499774.1  cordon-bleu protein-like 1 isoform X2

      Conserved Domains (2) summary
      PHA03247
      Location:9051176
      PHA03247; large tegument protein UL36; Provisional
      pfam09469
      Location:175251
      Cobl; Cordon-bleu ubiquitin-like domain
    5. XM_006499715.5XP_006499778.1  cordon-bleu protein-like 1 isoform X7

      Conserved Domains (2) summary
      PHA03247
      Location:8921163
      PHA03247; large tegument protein UL36; Provisional
      pfam09469
      Location:176254
      Cobl; Cordon-bleu ubiquitin-like domain
    6. XM_006499712.5XP_006499775.1  cordon-bleu protein-like 1 isoform X3

      Conserved Domains (2) summary
      PHA03247
      Location:9051176
      PHA03247; large tegument protein UL36; Provisional
      pfam09469
      Location:176252
      Cobl; Cordon-bleu ubiquitin-like domain
    7. XM_006499710.5XP_006499773.1  cordon-bleu protein-like 1 isoform X1

      Conserved Domains (2) summary
      PHA03247
      Location:9061177
      PHA03247; large tegument protein UL36; Provisional
      pfam09469
      Location:176252
      Cobl; Cordon-bleu ubiquitin-like domain
    8. XM_030251742.2XP_030107602.1  cordon-bleu protein-like 1 isoform X17

      Conserved Domains (2) summary
      PHA03247
      Location:8531124
      PHA03247; large tegument protein UL36; Provisional
      pfam09469
      Location:175253
      Cobl; Cordon-bleu ubiquitin-like domain
    9. XM_006499722.5XP_006499785.1  cordon-bleu protein-like 1 isoform X15

      Conserved Domains (2) summary
      PHA03247
      Location:8541125
      PHA03247; large tegument protein UL36; Provisional
      pfam09469
      Location:175253
      Cobl; Cordon-bleu ubiquitin-like domain
    10. XM_006499714.5XP_006499777.1  cordon-bleu protein-like 1 isoform X6

      Conserved Domains (2) summary
      PHA03247
      Location:8921163
      PHA03247; large tegument protein UL36; Provisional
      pfam09469
      Location:175253
      Cobl; Cordon-bleu ubiquitin-like domain
    11. XM_030251741.2XP_030107601.1  cordon-bleu protein-like 1 isoform X16

      Conserved Domains (2) summary
      PHA03247
      Location:8541125
      PHA03247; large tegument protein UL36; Provisional
      pfam09469
      Location:176254
      Cobl; Cordon-bleu ubiquitin-like domain
    12. XM_006499721.5XP_006499784.1  cordon-bleu protein-like 1 isoform X14

      Conserved Domains (2) summary
      PHA03247
      Location:8551126
      PHA03247; large tegument protein UL36; Provisional
      pfam09469
      Location:176254
      Cobl; Cordon-bleu ubiquitin-like domain
    13. XM_006499713.5XP_006499776.1  cordon-bleu protein-like 1 isoform X5

      Conserved Domains (2) summary
      PHA03247
      Location:8931164
      PHA03247; large tegument protein UL36; Provisional
      pfam09469
      Location:176254
      Cobl; Cordon-bleu ubiquitin-like domain
    14. XM_006499718.5XP_006499781.1  cordon-bleu protein-like 1 isoform X11

      Conserved Domains (2) summary
      PHA03247
      Location:8681139
      PHA03247; large tegument protein UL36; Provisional
      pfam09469
      Location:176252
      Cobl; Cordon-bleu ubiquitin-like domain
    15. XM_030251750.1XP_030107610.1  cordon-bleu protein-like 1 isoform X21

      Conserved Domains (1) summary
      PHA03247
      Location:646917
      PHA03247; large tegument protein UL36; Provisional
    16. XM_030251749.1XP_030107609.1  cordon-bleu protein-like 1 isoform X21

      Conserved Domains (1) summary
      PHA03247
      Location:646917
      PHA03247; large tegument protein UL36; Provisional
    17. XM_036162291.1XP_036018184.1  cordon-bleu protein-like 1 isoform X10

      Conserved Domains (5) summary
      PHA03247
      Location:8731144
      PHA03247; large tegument protein UL36; Provisional
      pfam09469
      Location:156234
      Cobl; Cordon-bleu ubiquitin-like domain
      cd21762
      Location:12111214
      WH2; actin-binding sequence [structural motif]
      cl28922
      Location:72136
      Ubiquitin_like_fold; Beta-grasp ubiquitin-like fold
      cl41728
      Location:11901214
      WH2; Wiskott-Aldrich Syndrome Homology (WASP) region 2 (WH2 motif), and similar proteins
    18. XM_006499723.4XP_006499786.1  cordon-bleu protein-like 1 isoform X20

      See identical proteins and their annotated locations for XP_006499786.1

      Conserved Domains (2) summary
      PHA03247
      Location:8221093
      PHA03247; large tegument protein UL36; Provisional
      pfam09469
      Location:92168
      Cobl; Cordon-bleu ubiquitin-like domain
    19. XM_030251745.1XP_030107605.1  cordon-bleu protein-like 1 isoform X19

      Conserved Domains (2) summary
      PHA03247
      Location:8491120
      PHA03247; large tegument protein UL36; Provisional
      pfam09469
      Location:132210
      Cobl; Cordon-bleu ubiquitin-like domain
    20. XM_030251744.1XP_030107604.1  cordon-bleu protein-like 1 isoform X18

      Conserved Domains (2) summary
      PHA03247
      Location:8501121
      PHA03247; large tegument protein UL36; Provisional
      pfam09469
      Location:133211
      Cobl; Cordon-bleu ubiquitin-like domain
    21. XM_006499720.2XP_006499783.1  cordon-bleu protein-like 1 isoform X13

      Conserved Domains (2) summary
      PHA03247
      Location:8621133
      PHA03247; large tegument protein UL36; Provisional
      pfam09469
      Location:132208
      Cobl; Cordon-bleu ubiquitin-like domain
    22. XM_006499719.2XP_006499782.1  cordon-bleu protein-like 1 isoform X12

      Conserved Domains (2) summary
      PHA03247
      Location:8631134
      PHA03247; large tegument protein UL36; Provisional
      pfam09469
      Location:133209
      Cobl; Cordon-bleu ubiquitin-like domain
    23. XM_006499724.3XP_006499787.1  cordon-bleu protein-like 1 isoform X20

      See identical proteins and their annotated locations for XP_006499787.1

      Conserved Domains (2) summary
      PHA03247
      Location:8221093
      PHA03247; large tegument protein UL36; Provisional
      pfam09469
      Location:92168
      Cobl; Cordon-bleu ubiquitin-like domain
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