Format

Send to:

Choose Destination
    • Showing Current items.

    Fam168a family with sequence similarity 168, member A [ Mus musculus (house mouse) ]

    Gene ID: 319604, updated on 31-Jan-2019

    Summary

    Official Symbol
    Fam168aprovided by MGI
    Official Full Name
    family with sequence similarity 168, member Aprovided by MGI
    Primary source
    MGI:MGI:2442372
    See related
    Ensembl:ENSMUSG00000029461
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    mKIAA0280; 2610030B18Rik; B930006L02Rik
    Expression
    Ubiquitous expression in cerebellum adult (RPKM 32.8), CNS E18 (RPKM 31.4) and 28 other tissues See more
    Orthologs

    Genomic context

    See Fam168a in Genome Data Viewer
    Location:
    7; 7 E2
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 7 NC_000073.6 (100706640..100841646)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 7 NC_000073.5 (107855216..107990160)

    Chromosome 7 - NC_000073.6Genomic Context describing neighboring genes Neighboring gene pleckstrin homology domain containing, family B (evectins) member 1 Neighboring gene predicted gene, 35082 Neighboring gene glyceraldehyde-3-phosphate dehydrogenase pseudogene Neighboring gene RELT tumor necrosis factor receptor Neighboring gene Rho guanine nucleotide exchange factor (GEF) 17 Neighboring gene microRNA 3102

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    positive regulation of base-excision repair IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    positive regulation of base-excision repair ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    cellular_component ND
    No biological Data available
    more info
     

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001362169.1NP_001349098.1  protein FAM168A isoform 1

      Status: VALIDATED

      Source sequence(s)
      AK043083, BC079886, CJ101582
      Conserved Domains (1) summary
      pfam14944
      Location:1244
      TCRP1; Tongue Cancer Chemotherapy Resistant Protein 1
    2. NM_001362170.1NP_001349099.1  protein FAM168A isoform 2

      Status: VALIDATED

      Source sequence(s)
      AK048559, BC079886, CJ101582
      Conserved Domains (1) summary
      pfam14944
      Location:1235
      TCRP1; Tongue Cancer Chemotherapy Resistant Protein 1
    3. NM_178764.4NP_848879.1  protein FAM168A isoform 2

      See identical proteins and their annotated locations for NP_848879.1

      Status: VALIDATED

      Source sequence(s)
      BC079886, CJ101582
      Consensus CDS
      CCDS21505.1
      UniProtKB/Swiss-Prot
      Q8BGZ2
      UniProtKB/TrEMBL
      Q68FE1
      Related
      ENSMUSP00000038233.7, ENSMUST00000049053.8
      Conserved Domains (1) summary
      pfam14944
      Location:1235
      TCRP1; Tongue Cancer Chemotherapy Resistant Protein 1

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000073.6 Reference GRCm38.p4 C57BL/6J

      Range
      100706640..100841646
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006507919.2XP_006507982.1  protein FAM168A isoform X1

      UniProtKB/Swiss-Prot
      Q8BGZ2
      Related
      ENSMUSP00000102657.2, ENSMUST00000107042.8
      Conserved Domains (1) summary
      pfam14944
      Location:1244
      TCRP1; Tongue Cancer Chemotherapy Resistant Protein 1
    2. XM_006507922.2XP_006507985.1  protein FAM168A isoform X2

      UniProtKB/Swiss-Prot
      Q8BGZ2
      UniProtKB/TrEMBL
      Q68FE1
      Related
      ENSMUSP00000146851.1, ENSMUST00000207875.1
      Conserved Domains (1) summary
      pfam14944
      Location:1235
      TCRP1; Tongue Cancer Chemotherapy Resistant Protein 1
    3. XM_006507920.2XP_006507983.1  protein FAM168A isoform X1

      See identical proteins and their annotated locations for XP_006507983.1

      UniProtKB/Swiss-Prot
      Q8BGZ2
      Conserved Domains (1) summary
      pfam14944
      Location:1244
      TCRP1; Tongue Cancer Chemotherapy Resistant Protein 1
    4. XM_011241829.2XP_011240131.1  protein FAM168A isoform X3

      See identical proteins and their annotated locations for XP_011240131.1

      Conserved Domains (1) summary
      pfam14944
      Location:1193
      TCRP1; Tongue Cancer Chemotherapy Resistant Protein 1
    Support Center