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    Idi1 isopentenyl-diphosphate delta isomerase [ Mus musculus (house mouse) ]

    Gene ID: 319554, updated on 31-Jan-2019

    Summary

    Official Symbol
    Idi1provided by MGI
    Official Full Name
    isopentenyl-diphosphate delta isomeraseprovided by MGI
    Primary source
    MGI:MGI:2442264
    See related
    Ensembl:ENSMUSG00000058258
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    IPPI1; 4832416K17Rik
    Expression
    Ubiquitous expression in liver E14 (RPKM 38.1), liver E18 (RPKM 34.3) and 27 other tissues See more

    Genomic context

    See Idi1 in Genome Data Viewer
    Location:
    13; 13 A1
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 13 NC_000079.6 (8885606..8892396)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 13 NC_000079.5 (8884852..8891642)

    Chromosome 13 - NC_000079.6Genomic Context describing neighboring genes Neighboring gene adenosine deaminase, RNA-specific, B2 Neighboring gene WD repeat domain 37 Neighboring gene ribosomal protein L10A, pseudogene 2 Neighboring gene isopentenyl-diphosphate delta isomerase 2 pseudogene Neighboring gene isopentenyl-diphosphate delta isomerase 2

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (2) 

    Pathways from BioSystems

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    • Homologs of the Idi1 gene: The Idi1 gene is conserved in human, chimpanzee, Rhesus monkey, dog, cow, rat, chicken, zebrafish, fruit fly, mosquito, S.cerevisiae, K.lactis, E.gossypii, S.pombe, M.oryzae, N.crassa, A.thaliana, rice, and frog.
    • Orthologs

    Clone Names

    • MGC8139, MGC118013

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    isopentenyl-diphosphate delta-isomerase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    isopentenyl-diphosphate delta-isomerase activity ISO
    Inferred from Sequence Orthology
    more info
     
    magnesium ion binding ISO
    Inferred from Sequence Orthology
    more info
     
    manganese ion binding ISO
    Inferred from Sequence Orthology
    more info
     
    Process Evidence Code Pubs
    isopentenyl diphosphate biosynthetic process IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    isoprenoid biosynthetic process ISO
    Inferred from Sequence Orthology
    more info
     
    response to stilbenoid IEP
    Inferred from Expression Pattern
    more info
    PubMed 
    Component Evidence Code Pubs
    mitochondrion HDA PubMed 
    peroxisome ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    isopentenyl-diphosphate Delta-isomerase 1
    Names
    IPP isomerase 1
    isopentenyl pyrophosphate isomerase 1
    NP_663335.2

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_145360.2NP_663335.2  isopentenyl-diphosphate Delta-isomerase 1

      See identical proteins and their annotated locations for NP_663335.2

      Status: VALIDATED

      Source sequence(s)
      AC124732, AK160832, BE953932
      Consensus CDS
      CCDS26233.2
      UniProtKB/Swiss-Prot
      P58044
      UniProtKB/TrEMBL
      G3XA48
      Related
      ENSMUSP00000132780.2, ENSMUST00000169314.8
      Conserved Domains (2) summary
      COG1443
      Location:75278
      Idi; Isopentenyldiphosphate isomerase [Lipid transport and metabolism]
      cl00447
      Location:77283
      Nudix_Hydrolase; Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+ ...

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000079.6 Reference GRCm38.p4 C57BL/6J

      Range
      8885606..8892396
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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