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    Fndc3a fibronectin type III domain containing 3A [ Mus musculus (house mouse) ]

    Gene ID: 319448, updated on 23-Jun-2021

    Summary

    Official Symbol
    Fndc3aprovided by MGI
    Official Full Name
    fibronectin type III domain containing 3Aprovided by MGI
    Primary source
    MGI:MGI:1196463
    See related
    Ensembl:ENSMUSG00000033487
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    s; sys; Fndc; Fndc3; D14Ertd453; D14Ertd453e; 1700094E19Rik; F730017H24Rik
    Expression
    Ubiquitous expression in testis adult (RPKM 15.1), placenta adult (RPKM 12.9) and 28 other tissues See more
    Orthologs
    NEW
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    Genomic context

    See Fndc3a in Genome Data Viewer
    Location:
    14 D2; 14 37.62 cM
    Exon count:
    31
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 14 NC_000080.7 (72775393..72948141, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 14 NC_000080.6 (72537948..72710701, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 14 NC_000080.5 (72937760..73109810, complement)

    Chromosome 14 - NC_000080.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 30500 Neighboring gene motilin receptor, pseudogene Neighboring gene predicted gene, 35218 Neighboring gene predicted gene 4606 Neighboring gene predicted gene, 41206

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Phenotypes

    Associated conditions

    Description Tests
    symplastic spermatids
    GeneReviews: Not available

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Component Evidence Code Pubs
    located_in Golgi apparatus ISO
    Inferred from Sequence Orthology
    more info
     
    located_in acrosomal vesicle IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in cytoplasmic vesicle IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in cytosol IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in integral component of membrane IEA
    Inferred from Electronic Annotation
    more info
     
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
     
    located_in vesicle membrane IDA
    Inferred from Direct Assay
    more info
    PubMed 

    General protein information

    Preferred Names
    fibronectin type-III domain-containing protein 3A
    Names
    fibronectin domain-containing protein 3a

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_207636.2NP_997519.2  fibronectin type-III domain-containing protein 3A

      See identical proteins and their annotated locations for NP_997519.2

      Status: VALIDATED

      Source sequence(s)
      BC094678, DQ192036
      Consensus CDS
      CCDS27264.1
      UniProtKB/Swiss-Prot
      Q8BX90
      Related
      ENSMUSP00000086411.6, ENSMUST00000089017.12
      Conserved Domains (1) summary
      cd00063
      Location:371462
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000080.7 Reference GRCm39 C57BL/6J

      Range
      72775393..72948141 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006519115.5XP_006519178.2  fibronectin type-III domain-containing protein 3A isoform X1

      See identical proteins and their annotated locations for XP_006519178.2

      UniProtKB/Swiss-Prot
      Q8BX90
      Conserved Domains (1) summary
      cd00063
      Location:371462
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    2. XM_036158666.1XP_036014559.1  fibronectin type-III domain-containing protein 3A isoform X1

      Conserved Domains (1) summary
      cd00063
      Location:371462
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    3. XM_030247858.2XP_030103718.1  fibronectin type-III domain-containing protein 3A isoform X4

      Conserved Domains (1) summary
      cd00063
      Location:307398
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    4. XM_006519116.5XP_006519179.1  fibronectin type-III domain-containing protein 3A isoform X1

      See identical proteins and their annotated locations for XP_006519179.1

      UniProtKB/Swiss-Prot
      Q8BX90
      Conserved Domains (1) summary
      cd00063
      Location:371462
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    5. XM_030247857.2XP_030103717.1  fibronectin type-III domain-containing protein 3A isoform X1

      Conserved Domains (1) summary
      cd00063
      Location:371462
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    6. XM_036158665.1XP_036014558.1  fibronectin type-III domain-containing protein 3A isoform X1

      Conserved Domains (1) summary
      cd00063
      Location:371462
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    7. XM_017316055.3XP_017171544.1  fibronectin type-III domain-containing protein 3A isoform X2

      Conserved Domains (1) summary
      cd00063
      Location:348439
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    8. XM_006519118.5XP_006519181.1  fibronectin type-III domain-containing protein 3A isoform X3

      Related
      ENSMUSP00000124218.2, ENSMUST00000162825.8
      Conserved Domains (1) summary
      cd00063
      Location:315406
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
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