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    Rpl17 ribosomal protein L17 [ Mus musculus (house mouse) ]

    Gene ID: 319195, updated on 5-Sep-2021

    Summary

    Official Symbol
    Rpl17provided by MGI
    Official Full Name
    ribosomal protein L17provided by MGI
    Primary source
    MGI:MGI:2448270
    See related
    Ensembl:ENSMUSG00000062328
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Expression
    Ubiquitous expression in liver E14 (RPKM 250.7), bladder adult (RPKM 230.9) and 25 other tissues See more
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    Genomic context

    See Rpl17 in Genome Data Viewer
    Location:
    18; 18 E3
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 18 NC_000084.7 (75132049..75136452)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 18 NC_000084.6 (74998978..75003381)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 18 NC_000084.5 (75160131..75163035)

    Chromosome 18 - NC_000084.7Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA 9030625G05 gene Neighboring gene lipase, endothelial Neighboring gene small nucleolar RNA, C/D box 58B Neighboring gene predicted gene, 23301 Neighboring gene cDNA sequence BC031181 Neighboring gene predicted gene, 26202 Neighboring gene dymeclin Neighboring gene predicted gene, 52344

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Pathways from PubChem

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    • Homologs of the Rpl17 gene: The Rpl17 gene is conserved in human, chimpanzee, Rhesus monkey, dog, cow, rat, S.cerevisiae, K.lactis, E.gossypii, S.pombe, M.oryzae, N.crassa, A.thaliana, and rice.
    • Orthologs

    Clone Names

    • MGC103289, MGC118163

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables large ribosomal subunit rRNA binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    enables structural constituent of ribosome IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    enables structural constituent of ribosome ISO
    Inferred from Sequence Orthology
    more info
     
    Process Evidence Code Pubs
    involved_in cytoplasmic translation IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    involved_in positive regulation of G1/S transition of mitotic cell cycle ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in translation IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    located_in A band ISO
    Inferred from Sequence Orthology
    more info
     
    located_in cytosol TAS
    Traceable Author Statement
    more info
     
    part_of cytosolic large ribosomal subunit IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    part_of cytosolic large ribosomal subunit ISO
    Inferred from Sequence Orthology
    more info
     
    located_in cytosolic ribosome ISO
    Inferred from Sequence Orthology
    more info
     
    part_of large ribosomal subunit IEA
    Inferred from Electronic Annotation
    more info
     
    located_in nucleus ISO
    Inferred from Sequence Orthology
    more info
     
    part_of polysome ISO
    Inferred from Sequence Orthology
    more info
     
    located_in ribosome IEA
    Inferred from Electronic Annotation
    more info
     
    is_active_in synapse EXP
    Inferred from Experiment
    more info
    PubMed 
    is_active_in synapse IDA
    Inferred from Direct Assay
    more info
    PubMed 

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001002239.3NP_001002239.2  60S ribosomal protein L17

      See identical proteins and their annotated locations for NP_001002239.2

      Status: VALIDATED

      Source sequence(s)
      AA407762, AK002770, BY031981
      Consensus CDS
      CCDS29344.1
      UniProtKB/TrEMBL
      Q6ZWZ7
      Related
      ENSMUSP00000078654.6, ENSMUST00000079716.6
      Conserved Domains (1) summary
      PTZ00178
      Location:1165
      PTZ00178; 60S ribosomal protein L17; Provisional

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000084.7 Reference GRCm39 C57BL/6J

      Range
      75132049..75136452
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006525996.1XP_006526059.1  60S ribosomal protein L17 isoform X2

      See identical proteins and their annotated locations for XP_006526059.1

      UniProtKB/TrEMBL
      Q6ZWZ7
      Related
      ENSMUSP00000157556.2, ENSMUST00000237431.2
      Conserved Domains (1) summary
      PTZ00178
      Location:1165
      PTZ00178; 60S ribosomal protein L17; Provisional
    2. XM_036161166.1XP_036017059.1  60S ribosomal protein L17 isoform X3

      Conserved Domains (1) summary
      PTZ00178
      Location:1127
      PTZ00178; 60S ribosomal protein L17; Provisional
    3. XM_017317919.3XP_017173408.1  60S ribosomal protein L17 isoform X2

      UniProtKB/TrEMBL
      Q6ZWZ7
      Conserved Domains (1) summary
      PTZ00178
      Location:1165
      PTZ00178; 60S ribosomal protein L17; Provisional
    4. XM_017317918.2XP_017173407.1  60S ribosomal protein L17 isoform X1

      Conserved Domains (1) summary
      PTZ00178
      Location:45182
      PTZ00178; 60S ribosomal protein L17; Provisional
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