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    Rpl17 ribosomal protein L17 [ Mus musculus (house mouse) ]

    Gene ID: 319195, updated on 9-Sep-2018

    Summary

    Official Symbol
    Rpl17provided by MGI
    Official Full Name
    ribosomal protein L17provided by MGI
    Primary source
    MGI:MGI:2448270
    See related
    Ensembl:ENSMUSG00000062328
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Expression
    Ubiquitous expression in liver E14 (RPKM 250.7), bladder adult (RPKM 230.9) and 25 other tissues See more
    Orthologs

    Genomic context

    See Rpl17 in Genome Data Viewer
    Location:
    18; 18 E2
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 18 NC_000084.6 (74998978..75003381)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 18 NC_000084.5 (75160131..75163035)

    Chromosome 18 - NC_000084.6Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA 9030625G05 gene Neighboring gene lipase, endothelial Neighboring gene small nucleolar RNA, C/D box 58B Neighboring gene cDNA sequence BC031181 Neighboring gene dymeclin Neighboring gene ATP synthase subunit d, mitochondrial pseudogene

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Pathways from BioSystems

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Clone Names

    • MGC103289, MGC118163

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    large ribosomal subunit rRNA binding ISO
    Inferred from Sequence Orthology
    more info
     
    protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    structural constituent of ribosome IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Process Evidence Code Pubs
    cytoplasmic translation IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    positive regulation of G1/S transition of mitotic cell cycle ISO
    Inferred from Sequence Orthology
    more info
     
    translation IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    A band ISO
    Inferred from Sequence Orthology
    more info
     
    cytosolic large ribosomal subunit IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    cytosolic large ribosomal subunit ISO
    Inferred from Sequence Orthology
    more info
     
    intracellular IEA
    Inferred from Electronic Annotation
    more info
     
    large ribosomal subunit IEA
    Inferred from Electronic Annotation
    more info
     
    nucleus ISO
    Inferred from Sequence Orthology
    more info
     
    polysome ISO
    Inferred from Sequence Orthology
    more info
     
    ribosome IEA
    Inferred from Electronic Annotation
    more info
     
    synapse EXP
    Inferred from Experiment
    more info
    PubMed 
    synapse IDA
    Inferred from Direct Assay
    more info
    PubMed 

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001002239.3NP_001002239.2  60S ribosomal protein L17

      See identical proteins and their annotated locations for NP_001002239.2

      Status: VALIDATED

      Source sequence(s)
      AA407762, AK002770, BY031981
      Consensus CDS
      CCDS29344.1
      UniProtKB/TrEMBL
      Q6ZWZ7
      Related
      ENSMUSP00000078654.5, ENSMUST00000079716.5
      Conserved Domains (1) summary
      PTZ00178
      Location:1165
      PTZ00178; 60S ribosomal protein L17; Provisional

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000084.6 Reference GRCm38.p4 C57BL/6J

      Range
      74998978..75003381
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006525996.1XP_006526059.1  60S ribosomal protein L17 isoform X2

      See identical proteins and their annotated locations for XP_006526059.1

      UniProtKB/TrEMBL
      Q6ZWZ7
      Conserved Domains (1) summary
      PTZ00178
      Location:1165
      PTZ00178; 60S ribosomal protein L17; Provisional
    2. XM_017317918.1XP_017173407.1  60S ribosomal protein L17 isoform X1

    3. XM_017317919.1XP_017173408.1  60S ribosomal protein L17 isoform X2

      UniProtKB/TrEMBL
      Q6ZWZ7
      Conserved Domains (1) summary
      PTZ00178
      Location:1165
      PTZ00178; 60S ribosomal protein L17; Provisional
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