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    Rnf19a ring finger protein 19A [ Mus musculus (house mouse) ]

    Gene ID: 30945, updated on 9-Sep-2018

    Summary

    Official Symbol
    Rnf19aprovided by MGI
    Official Full Name
    ring finger protein 19Aprovided by MGI
    Primary source
    MGI:MGI:1353623
    See related
    Ensembl:ENSMUSG00000022280
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    XYbp; Rnf19; Dorfin; UIP117; AA032313; Ubce7ip2
    Expression
    Broad expression in testis adult (RPKM 56.1), liver E18 (RPKM 11.4) and 20 other tissues See more
    Orthologs

    Genomic context

    See Rnf19a in Genome Data Viewer
    Location:
    15; 15 B3.1
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 15 NC_000081.6 (36239934..36283147, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 15 NC_000081.5 (36169689..36212902, complement)

    Chromosome 15 - NC_000081.6Genomic Context describing neighboring genes Neighboring gene polymerase (RNA) II (DNA directed) polypeptide K Neighboring gene sperm associated antigen 1 Neighboring gene predicted gene, 41293 Neighboring gene microRNA 8097 Neighboring gene lactate dehydrogenase A pseudogene Neighboring gene ribosomal protein L7A, pseudogene 3

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Gene trapped (1) 

    Pathways from BioSystems

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    metal ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    transferase activity IEA
    Inferred from Electronic Annotation
    more info
     
    ubiquitin conjugating enzyme binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    ubiquitin protein ligase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    ubiquitin-protein transferase activity ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    cytoskeleton IEA
    Inferred from Electronic Annotation
    more info
     
    glutamatergic synapse EXP
    Inferred from Experiment
    more info
    PubMed 
    glutamatergic synapse IDA
    Inferred from Direct Assay
    more info
    PubMed 
    glutamatergic synapse IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    hippocampal mossy fiber to CA3 synapse EXP
    Inferred from Experiment
    more info
    PubMed 
    hippocampal mossy fiber to CA3 synapse IDA
    Inferred from Direct Assay
    more info
    PubMed 
    hippocampal mossy fiber to CA3 synapse IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    integral component of membrane IEA
    Inferred from Electronic Annotation
    more info
     
    membrane IEA
    Inferred from Electronic Annotation
    more info
     
    ubiquitin ligase complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 

    General protein information

    Preferred Names
    E3 ubiquitin-protein ligase RNF19A
    Names
    UBCM4-interacting protein 117
    XY body protein
    double ring-finger protein
    gametogenesis-expressed protein GEG-154
    ring finger protein (C3HC4 type) 19
    ubiquitin conjugating enzyme 7 interacting protein 2
    NP_038951.1
    XP_006520144.1

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001357631.1NP_001344560.1  E3 ubiquitin-protein ligase RNF19A

      Status: VALIDATED

      Source sequence(s)
      AC121577, AC147366
      Conserved Domains (4) summary
      smart00647
      Location:199264
      IBR; In Between Ring fingers
      pfam01485
      Location:297335
      IBR; IBR domain, a half RING-finger domain
      cd16775
      Location:131185
      RING-HC_RBR_RNF19A; RING finger, HC subclass, found in RING finger protein 19A (RNF19A) and similar proteins
      cl00570
      Location:361450
      AzlC; AzlC protein
    2. NM_013923.2NP_038951.1  E3 ubiquitin-protein ligase RNF19A

      See identical proteins and their annotated locations for NP_038951.1

      Status: VALIDATED

      Source sequence(s)
      AK147768, BY207861, CN695058, CO432840, DV656092
      Consensus CDS
      CCDS27427.1
      UniProtKB/Swiss-Prot
      P50636
      Related
      ENSMUSP00000022890.8, ENSMUST00000022890.9
      Conserved Domains (4) summary
      smart00184
      Location:132179
      RING; Ring finger
      smart00647
      Location:199264
      IBR; In Between Ring fingers
      pfam01485
      Location:297335
      IBR; IBR domain, a half RING-finger domain
      cl00570
      Location:361450
      AzlC; AzlC protein

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000081.6 Reference GRCm38.p4 C57BL/6J

      Range
      36239934..36283147 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006520081.3XP_006520144.1  E3 ubiquitin-protein ligase RNF19A isoform X1

      Related
      ENSMUSP00000154617.1, ENSMUST00000228358.1
      Conserved Domains (4) summary
      smart00647
      Location:199264
      IBR; In Between Ring fingers
      pfam01485
      Location:297335
      IBR; IBR domain, a half RING-finger domain
      cd16775
      Location:131185
      RING-HC_RBR_RNF19A; RING finger, HC subclass, found in RING finger protein 19A (RNF19A) and similar proteins
      cl00570
      Location:361450
      AzlC; AzlC protein
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