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    Polr1f RNA polymerase I subunit F [ Mus musculus (house mouse) ]

    Gene ID: 28071, updated on 23-Jun-2021

    Summary

    Official Symbol
    Polr1fprovided by MGI
    Official Full Name
    RNA polymerase I subunit Fprovided by MGI
    Primary source
    MGI:MGI:106292
    See related
    Ensembl:ENSMUSG00000020561
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Twistnb; D16Wsu83; D16Wsu83e; 2410173G11; 2810024J17Rik
    Expression
    Ubiquitous expression in ovary adult (RPKM 9.0), adrenal adult (RPKM 6.8) and 28 other tissues See more
    Orthologs
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    Genomic context

    See Polr1f in Genome Data Viewer
    Location:
    12; 12 A3
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 12 NC_000078.7 (33479593..33491434)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 12 NC_000078.6 (33429624..33439380)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 12 NC_000078.5 (34114489..34124245)

    Chromosome 12 - NC_000078.7Genomic Context describing neighboring genes Neighboring gene ataxin 7-like 1 Neighboring gene ataxin 7-like 1, opposite strand 2 Neighboring gene EF-hand calcium binding domain 10 Neighboring gene predicted gene, 23529 Neighboring gene ribosomal protein SA pseudogene

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Pathways from PubChem

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables DNA-directed 5'-3' RNA polymerase activity IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    acts_upstream_of_or_within cellular response to leukemia inhibitory factor IEP
    Inferred from Expression Pattern
    more info
    PubMed 
    Component Evidence Code Pubs
    part_of RNA polymerase I complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    DNA-directed RNA polymerase I subunit RPA43
    Names
    DNA-directed RNA polymerase I subunit F
    twist basic helix-loop-helix transcription factor 1 neighbor
    twist neighbor protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_172253.2NP_758457.1  DNA-directed RNA polymerase I subunit RPA43

      See identical proteins and their annotated locations for NP_758457.1

      Status: VALIDATED

      Source sequence(s)
      AK010829, AK016638, AK160682
      Consensus CDS
      CCDS25877.1
      UniProtKB/Swiss-Prot
      Q78WZ7
      UniProtKB/TrEMBL
      B2RT77
      Related
      ENSMUSP00000020877.8, ENSMUST00000020877.9
      Conserved Domains (1) summary
      cd04328
      Location:43126
      RNAP_I_Rpa43_N; RNAP_I_Rpa43_N: Rpa43, N-terminal ribonucleoprotein (RNP) domain. Rpa43 is a subunit of eukaryotic RNA polymerase (RNAP) I that is homologous to Rpb7 of eukaryotic RNAP II, Rpc25 of eukaryotic RNP III, and RpoE of archaeal RNAP. Rpa43 has two domains, an ...

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000078.7 Reference GRCm39 C57BL/6J

      Range
      33479593..33491434
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_036157465.1XP_036013358.1  DNA-directed RNA polymerase I subunit RPA43 isoform X1

      Conserved Domains (1) summary
      pfam17875
      Location:100125
      RPA43_OB; RPA43 OB domain in RNA Pol I
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