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    D6Wsu163e DNA segment, Chr 6, Wayne State University 163, expressed [ Mus musculus (house mouse) ]

    Gene ID: 28040, updated on 27-Jan-2018

    Summary

    Official Symbol
    D6Wsu163eprovided by MGI
    Official Full Name
    DNA segment, Chr 6, Wayne State University 163, expressedprovided by MGI
    Primary source
    MGI:MGI:107893
    See related
    Ensembl:ENSMUSG00000030347 Vega:OTTMUSG00000056339
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    C12orf4
    Expression
    Ubiquitous expression in CNS E18 (RPKM 7.4), placenta adult (RPKM 6.8) and 25 other tissues See more
    Orthologs

    Genomic context

    See D6Wsu163e in Genome Data Viewer
    Location:
    6 F3; 6 61.92 cM
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 6 NC_000072.6 (126939966..126975704)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 6 NC_000072.5 (126889984..126925722)

    Chromosome 6 - NC_000072.6Genomic Context describing neighboring genes Neighboring gene dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 4 Neighboring gene RAD51 associated protein 1 Neighboring gene metaxin 1 pseudogene Neighboring gene small nuclear ribonucleoprotein E pseudogene Neighboring gene fibroblast growth factor 6

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (2) 

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    biological_process ND
    No biological Data available
    more info
     
    regulation of mast cell degranulation ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    cellular_component ND
    No biological Data available
    more info
     
    cytoplasm ISO
    Inferred from Sequence Orthology
    more info
     

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_138594.3NP_613060.1  protein C12orf4 homolog

      See identical proteins and their annotated locations for NP_613060.1

      Status: PROVISIONAL

      Source sequence(s)
      AK045541
      Consensus CDS
      CCDS20560.1
      UniProtKB/Swiss-Prot
      Q91YN0
      Related
      ENSMUSP00000032497.3, OTTMUSP00000073085, ENSMUST00000032497.6, OTTMUST00000139237
      Conserved Domains (1) summary
      pfam10154
      Location:41546
      DUF2362; Uncharacterized conserved protein (DUF2362)

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000072.6 Reference GRCm38.p4 C57BL/6J

      Range
      126939966..126975704
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006506217.1XP_006506280.1  protein C12orf4 homolog isoform X1

      See identical proteins and their annotated locations for XP_006506280.1

      UniProtKB/Swiss-Prot
      Q91YN0
      Conserved Domains (1) summary
      pfam10154
      Location:41546
      DUF2362; Uncharacterized conserved protein (DUF2362)
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