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    Fam3c family with sequence similarity 3, member C [ Mus musculus (house mouse) ]

    Gene ID: 27999, updated on 12-Aug-2018

    Summary

    Official Symbol
    Fam3cprovided by MGI
    Official Full Name
    family with sequence similarity 3, member Cprovided by MGI
    Primary source
    MGI:MGI:107892
    See related
    Ensembl:ENSMUSG00000029672 Vega:OTTMUSG00000035360
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Ilei; D6Wsu176e
    Expression
    Ubiquitous expression in frontal lobe adult (RPKM 8.6), bladder adult (RPKM 7.7) and 27 other tissues See more
    Orthologs

    Genomic context

    See Fam3c in Genome Data Viewer
    Location:
    6 A3.1; 6 9.24 cM
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 6 NC_000072.6 (22306520..22356081, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 6 NC_000072.5 (22256522..22306081, complement)

    Chromosome 6 - NC_000072.6Genomic Context describing neighboring genes Neighboring gene cadherin-like and PC-esterase domain containing 1 Neighboring gene 60S ribosomal protein L21 pseudogene Neighboring gene wingless-type MMTV integration site family, member 16 Neighboring gene predicted gene, 38773 Neighboring gene predicted gene, 38774

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    Pathways from BioSystems

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    biological_process ND
    No biological Data available
    more info
     
    multicellular organism development IEA
    Inferred from Electronic Annotation
    more info
     
    negative regulation of gluconeogenesis IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    Golgi apparatus ISO
    Inferred from Sequence Orthology
    more info
     
    cytoplasmic vesicle IEA
    Inferred from Electronic Annotation
    more info
     
    extracellular region IEA
    Inferred from Electronic Annotation
    more info
     
    extracellular space HDA PubMed 

    General protein information

    Preferred Names
    protein FAM3C
    Names
    interleukin-like EMT inducer

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_138587.4NP_613053.3  protein FAM3C precursor

      See identical proteins and their annotated locations for NP_613053.3

      Status: PROVISIONAL

      Source sequence(s)
      AC115039
      Consensus CDS
      CCDS39436.1
      UniProtKB/Swiss-Prot
      Q91VU0
      Related
      ENSMUSP00000127709.1, OTTMUSP00000049500, ENSMUST00000165576.7, OTTMUST00000090295
      Conserved Domains (1) summary
      cd13940
      Location:53223
      ILEI_FAM3C; Interleukin-like EMT inducer

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000072.6 Reference GRCm38.p4 C57BL/6J

      Range
      22306520..22356081 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006505102.3XP_006505165.1  protein FAM3C isoform X1

      See identical proteins and their annotated locations for XP_006505165.1

      UniProtKB/Swiss-Prot
      Q91VU0
      Conserved Domains (1) summary
      cd13940
      Location:53223
      ILEI_FAM3C; Interleukin-like EMT inducer
    2. XM_006505103.3XP_006505166.1  protein FAM3C isoform X1

      See identical proteins and their annotated locations for XP_006505166.1

      UniProtKB/Swiss-Prot
      Q91VU0
      Conserved Domains (1) summary
      cd13940
      Location:53223
      ILEI_FAM3C; Interleukin-like EMT inducer
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