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    Fam3c FAM3 metabolism regulating signaling molecule C [ Mus musculus (house mouse) ]

    Gene ID: 27999, updated on 23-Jun-2021

    Summary

    Official Symbol
    Fam3cprovided by MGI
    Official Full Name
    FAM3 metabolism regulating signaling molecule Cprovided by MGI
    Primary source
    MGI:MGI:107892
    See related
    Ensembl:ENSMUSG00000029672
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Fam3; Ilei; D6Wsu176; D6Wsu176e
    Expression
    Ubiquitous expression in frontal lobe adult (RPKM 8.6), bladder adult (RPKM 7.7) and 27 other tissues See more
    Orthologs
    NEW
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    Try the new Transcript table

    Genomic context

    See Fam3c in Genome Data Viewer
    Location:
    6 A3.1; 6 9.24 cM
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 6 NC_000072.7 (22306519..22356080, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 6 NC_000072.6 (22306520..22356081, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 6 NC_000072.5 (22256522..22306081, complement)

    Chromosome 6 - NC_000072.7Genomic Context describing neighboring genes Neighboring gene cadherin-like and PC-esterase domain containing 1 Neighboring gene predicted gene 42573 Neighboring gene wingless-type MMTV integration site family, member 16 Neighboring gene predicted gene, 38773 Neighboring gene predicted gene, 38774

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    acts_upstream_of_or_within multicellular organism development IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in negative regulation of gluconeogenesis IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    located_in Golgi apparatus ISO
    Inferred from Sequence Orthology
    more info
     
    located_in cytoplasmic vesicle IEA
    Inferred from Electronic Annotation
    more info
     
    located_in extracellular region IEA
    Inferred from Electronic Annotation
    more info
     
    is_active_in extracellular space IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 

    General protein information

    Preferred Names
    protein FAM3C
    Names
    family with sequence similarity 3, member C
    interleukin-like EMT inducer

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_138587.4NP_613053.3  protein FAM3C precursor

      See identical proteins and their annotated locations for NP_613053.3

      Status: PROVISIONAL

      Source sequence(s)
      AC115039
      Consensus CDS
      CCDS39436.1
      UniProtKB/Swiss-Prot
      Q91VU0
      Related
      ENSMUSP00000127709.2, ENSMUST00000165576.8
      Conserved Domains (1) summary
      cd13940
      Location:53223
      ILEI_FAM3C; Interleukin-like EMT inducer

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000072.7 Reference GRCm39 C57BL/6J

      Range
      22306519..22356080 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006505102.5XP_006505165.1  protein FAM3C isoform X1

      See identical proteins and their annotated locations for XP_006505165.1

      UniProtKB/Swiss-Prot
      Q91VU0
      Conserved Domains (1) summary
      cd13940
      Location:53223
      ILEI_FAM3C; Interleukin-like EMT inducer
    2. XM_006505103.5XP_006505166.1  protein FAM3C isoform X1

      See identical proteins and their annotated locations for XP_006505166.1

      UniProtKB/Swiss-Prot
      Q91VU0
      Conserved Domains (1) summary
      cd13940
      Location:53223
      ILEI_FAM3C; Interleukin-like EMT inducer
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