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    Eif3b eukaryotic translation initiation factor 3, subunit B [ Mus musculus (house mouse) ]

    Gene ID: 27979, updated on 26-Sep-2022

    Summary

    Official Symbol
    Eif3bprovided by MGI
    Official Full Name
    eukaryotic translation initiation factor 3, subunit Bprovided by MGI
    Primary source
    MGI:MGI:106478
    See related
    Ensembl:ENSMUSG00000056076 AllianceGenome:MGI:106478
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    PRT1; Eif3s9; D5Wsu45e; EIF3-ETA; EIF3-P110; EIF3-P116
    Summary
    Contributes to translation initiation factor activity. Involved in translational initiation. Part of eukaryotic translation initiation factor 3 complex, eIF3m. Is active in synapse. Is expressed in several structures, including central nervous system; extraembryonic component; and sensory organ. Orthologous to human EIF3B (eukaryotic translation initiation factor 3 subunit B). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Ubiquitous expression in testis adult (RPKM 106.5), ovary adult (RPKM 52.6) and 28 other tissues See more
    Orthologs
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    Genomic context

    See Eif3b in Genome Data Viewer
    Location:
    5 G2; 5 78.97 cM
    Exon count:
    19
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 5 NC_000071.7 (140405060..140429113)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 5 NC_000071.6 (140419305..140443358)

    Chromosome 5 - NC_000071.7Genomic Context describing neighboring genes Neighboring gene sorting nexin 8 Neighboring gene predicted gene, 30550 Neighboring gene microRNA 7038 Neighboring gene kinesin family member 19B Neighboring gene predicted gene, 38728 Neighboring gene carbohydrate sulfotransferase 12

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    Pathways from PubChem

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables RNA binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    contributes_to translation initiation factor activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    contributes_to translation initiation factor activity IDA
    Inferred from Direct Assay
    more info
    PubMed 
    contributes_to translation initiation factor activity ISO
    Inferred from Sequence Orthology
    more info
     
    enables translation initiation factor activity ISO
    Inferred from Sequence Orthology
    more info
     
    enables translation initiation factor binding IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    involved_in IRES-dependent viral translational initiation ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in regulation of translational initiation ISO
    Inferred from Sequence Orthology
    more info
     
    acts_upstream_of_or_within translation IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in translational initiation IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    involved_in translational initiation IDA
    Inferred from Direct Assay
    more info
    PubMed 
    involved_in translational initiation ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in viral translational termination-reinitiation ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
     
    located_in cytoplasmic stress granule ISO
    Inferred from Sequence Orthology
    more info
     
    part_of eukaryotic translation initiation factor 3 complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    part_of eukaryotic translation initiation factor 3 complex IDA
    Inferred from Direct Assay
    more info
    PubMed 
    part_of eukaryotic translation initiation factor 3 complex ISO
    Inferred from Sequence Orthology
    more info
     
    part_of eukaryotic translation initiation factor 3 complex, eIF3m IDA
    Inferred from Direct Assay
    more info
    PubMed 
    is_active_in synapse EXP
    Inferred from Experiment
    more info
    PubMed 
    is_active_in synapse IDA
    Inferred from Direct Assay
    more info
    PubMed 

    General protein information

    Preferred Names
    eukaryotic translation initiation factor 3 subunit B
    Names
    eIF-3-eta
    eIF3 p116
    eukaryotic translation initiation factor 3 subunit 9
    eukaryotic translation initiation factor 3, subunit 9 (eta)

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_133916.2NP_598677.1  eukaryotic translation initiation factor 3 subunit B

      See identical proteins and their annotated locations for NP_598677.1

      Status: PROVISIONAL

      Source sequence(s)
      AC131670
      Consensus CDS
      CCDS19819.1
      UniProtKB/Swiss-Prot
      Q8JZQ9, Q922K2
      Related
      ENSMUSP00000098076.4, ENSMUST00000100507.8
      Conserved Domains (4) summary
      PHA03249
      Location:26148
      PHA03249; DNA packaging tegument protein UL25; Provisional
      COG5354
      Location:297796
      COG5354; Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
      cd12278
      Location:173253
      RRM_eIF3B; RNA recognition motif in eukaryotic translation initiation factor 3 subunit B (eIF-3B) and similar proteins
      sd00039
      Location:365412
      7WD40; WD40 repeat [structural motif]

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000071.7 Reference GRCm39 C57BL/6J

      Range
      140405060..140429113
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)