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    Eif3b eukaryotic translation initiation factor 3, subunit B [ Mus musculus (house mouse) ]

    Gene ID: 27979, updated on 12-Mar-2019

    Summary

    Official Symbol
    Eif3bprovided by MGI
    Official Full Name
    eukaryotic translation initiation factor 3, subunit Bprovided by MGI
    Primary source
    MGI:MGI:106478
    See related
    Ensembl:ENSMUSG00000056076
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    PRT1; Eif3s9; AL033316; AL033334; AL033369; AW208965; D5Wsu45e; EIF3-ETA; EIF3-P110; EIF3-P116
    Expression
    Ubiquitous expression in testis adult (RPKM 106.5), ovary adult (RPKM 52.6) and 28 other tissues See more
    Orthologs

    Genomic context

    See Eif3b in Genome Data Viewer
    Location:
    5 G2; 5 78.97 cM
    Exon count:
    19
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 5 NC_000071.6 (140419305..140443358)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 5 NC_000071.5 (140895259..140919312)

    Chromosome 5 - NC_000071.6Genomic Context describing neighboring genes Neighboring gene sorting nexin 8 Neighboring gene predicted gene, 30550 Neighboring gene microRNA 7038 Neighboring gene predicted gene 4869 Neighboring gene predicted gene, 38728 Neighboring gene carbohydrate sulfotransferase 12

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    Pathways from BioSystems

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    RNA binding ISO
    Inferred from Sequence Orthology
    more info
     
    nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
     
    protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    contributes_to translation initiation factor activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    contributes_to translation initiation factor activity IDA
    Inferred from Direct Assay
    more info
    PubMed 
    translation initiation factor activity ISO
    Inferred from Sequence Orthology
    more info
     
    contributes_to translation initiation factor activity ISO
    Inferred from Sequence Orthology
    more info
     
    translation initiation factor binding IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    IRES-dependent viral translational initiation ISO
    Inferred from Sequence Orthology
    more info
     
    regulation of translational initiation ISO
    Inferred from Sequence Orthology
    more info
     
    translation IEA
    Inferred from Electronic Annotation
    more info
     
    translational initiation IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    translational initiation IDA
    Inferred from Direct Assay
    more info
    PubMed 
    translational initiation ISO
    Inferred from Sequence Orthology
    more info
     
    viral translational termination-reinitiation ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    cytoplasm IEA
    Inferred from Electronic Annotation
    more info
     
    eukaryotic translation initiation factor 3 complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    eukaryotic translation initiation factor 3 complex IDA
    Inferred from Direct Assay
    more info
    PubMed 
    eukaryotic translation initiation factor 3 complex ISO
    Inferred from Sequence Orthology
    more info
     
    eukaryotic translation initiation factor 3 complex, eIF3m IDA
    Inferred from Direct Assay
    more info
    PubMed 
    synapse EXP
    Inferred from Experiment
    more info
    PubMed 
    synapse IDA
    Inferred from Direct Assay
    more info
    PubMed 

    General protein information

    Preferred Names
    eukaryotic translation initiation factor 3 subunit B
    Names
    eIF-3-eta
    eIF3 p116
    eIF3b
    eukaryotic translation initiation factor 3 subunit 9
    eukaryotic translation initiation factor 3, subunit 9 (eta)

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_133916.2NP_598677.1  eukaryotic translation initiation factor 3 subunit B

      See identical proteins and their annotated locations for NP_598677.1

      Status: PROVISIONAL

      Source sequence(s)
      AC131670
      Consensus CDS
      CCDS19819.1
      UniProtKB/Swiss-Prot
      Q8JZQ9
      Related
      ENSMUSP00000098076.3, ENSMUST00000100507.7
      Conserved Domains (4) summary
      PHA03249
      Location:26148
      PHA03249; DNA packaging tegument protein UL25; Provisional
      COG5354
      Location:297796
      COG5354; Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
      cd12278
      Location:173253
      RRM_eIF3B; RNA recognition motif in eukaryotic translation initiation factor 3 subunit B (eIF-3B) and similar proteins
      sd00039
      Location:365412
      7WD40; WD40 repeat [structural motif]

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000071.6 Reference GRCm38.p4 C57BL/6J

      Range
      140419305..140443358
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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