Format

Send to:

Choose Destination
    • Showing Current items.

    Pigs phosphatidylinositol glycan anchor biosynthesis, class S [ Mus musculus (house mouse) ]

    Gene ID: 276846, updated on 23-Jun-2021

    Summary

    Official Symbol
    Pigsprovided by MGI
    Official Full Name
    phosphatidylinositol glycan anchor biosynthesis, class Sprovided by MGI
    Primary source
    MGI:MGI:2687325
    See related
    Ensembl:ENSMUSG00000041958
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Gm393; Gm689; BC058979
    Expression
    Ubiquitous expression in adrenal adult (RPKM 76.5), ovary adult (RPKM 51.5) and 28 other tissues See more
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See Pigs in Genome Data Viewer
    Location:
    11; 11 B5
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 11 NC_000077.7 (78219248..78233602)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 11 NC_000077.6 (78328422..78342776)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 11 NC_000077.5 (78141924..78156278)

    Chromosome 11 - NC_000077.7Genomic Context describing neighboring genes Neighboring gene sperm associated antigen 5 Neighboring gene aldolase C, fructose-bisphosphate Neighboring gene unc-119 lipid binding chaperone Neighboring gene forkhead box N1 Neighboring gene predicted gene, 30367

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Pathways from PubChem

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Process Evidence Code Pubs
    acts_upstream_of_or_within GPI anchor biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in attachment of GPI anchor to protein IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    involved_in attachment of GPI anchor to protein IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    Component Evidence Code Pubs
    part_of GPI-anchor transamidase complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    part_of GPI-anchor transamidase complex IDA
    Inferred from Direct Assay
    more info
    PubMed 
    part_of GPI-anchor transamidase complex ISO
    Inferred from Sequence Orthology
    more info
     
    located_in endoplasmic reticulum IEA
    Inferred from Electronic Annotation
    more info
     
    located_in integral component of membrane IEA
    Inferred from Electronic Annotation
    more info
     
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    GPI transamidase component PIG-S
    Names
    phosphatidylinositol glycan, class S homolog
    phosphatidylinositol-glycan biosynthesis class S protein

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_201406.1NP_958808.1  GPI transamidase component PIG-S

      See identical proteins and their annotated locations for NP_958808.1

      Status: PROVISIONAL

      Source sequence(s)
      BC058979
      Consensus CDS
      CCDS25100.1
      UniProtKB/Swiss-Prot
      Q6PD26
      UniProtKB/TrEMBL
      Q3V307
      Related
      ENSMUSP00000044871.9, ENSMUST00000048073.9
      Conserved Domains (1) summary
      pfam10510
      Location:22546
      PIG-S; Phosphatidylinositol-glycan biosynthesis class S protein

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000077.7 Reference GRCm39 C57BL/6J

      Range
      78219248..78233602
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006533471.4XP_006533534.1  GPI transamidase component PIG-S isoform X1

      Conserved Domains (1) summary
      pfam10510
      Location:2485
      PIG-S; Phosphatidylinositol-glycan biosynthesis class S protein
    Support Center