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    Abcf3 ATP-binding cassette, sub-family F (GCN20), member 3 [ Mus musculus (house mouse) ]

    Gene ID: 27406, updated on 23-Jun-2021

    Summary

    Official Symbol
    Abcf3provided by MGI
    Official Full Name
    ATP-binding cassette, sub-family F (GCN20), member 3provided by MGI
    Primary source
    MGI:MGI:1351656
    See related
    Ensembl:ENSMUSG00000003234
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    AI326318; AU016058; BB119416
    Expression
    Ubiquitous expression in testis adult (RPKM 21.7), cerebellum adult (RPKM 14.5) and 28 other tissues See more
    Orthologs
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    Genomic context

    See Abcf3 in Genome Data Viewer
    Location:
    16 A3; 16 12.46 cM
    Exon count:
    21
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 16 NC_000082.7 (20367309..20380353)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 16 NC_000082.6 (20548556..20561603)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 16 NC_000082.5 (20548676..20561676)

    Chromosome 16 - NC_000082.7Genomic Context describing neighboring genes Neighboring gene adaptor-related protein complex 2, mu 1 subunit Neighboring gene mitochondrial ribosomal protein S18B pseudogene Neighboring gene predicted gene, 20164 Neighboring gene predicted gene, 35685 Neighboring gene von Willebrand factor A domain containing 5B2

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (1) 

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables ATP binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
     
    enables nucleotide binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within defense response to virus IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    ATP-binding cassette sub-family F member 3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_013852.2NP_038880.1  ATP-binding cassette sub-family F member 3

      See identical proteins and their annotated locations for NP_038880.1

      Status: VALIDATED

      Source sequence(s)
      AC087898, BC032923, CD540120
      Consensus CDS
      CCDS28049.1
      UniProtKB/Swiss-Prot
      Q8K268
      Related
      ENSMUSP00000003319.6, ENSMUST00000003319.6
      Conserved Domains (4) summary
      cd03221
      Location:492683
      ABCF_EF-3; ATP-binding cassette domain of elongation factor 3, subfamily F
      PLN03073
      Location:6700
      PLN03073; ABC transporter F family; Provisional
      pfam12848
      Location:395477
      ABC_tran_Xtn; ABC transporter
      cl21455
      Location:266363
      P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000082.7 Reference GRCm39 C57BL/6J

      Range
      20367309..20380353
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_384567.5 RNA Sequence

    2. XR_001781829.3 RNA Sequence

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