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    Ptdss2 phosphatidylserine synthase 2 [ Mus musculus (house mouse) ]

    Gene ID: 27388, updated on 27-Jan-2018

    Summary

    Official Symbol
    Ptdss2provided by MGI
    Official Full Name
    phosphatidylserine synthase 2provided by MGI
    Primary source
    MGI:MGI:1351664
    See related
    Ensembl:ENSMUSG00000025495 Vega:OTTMUSG00000037303
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    PSS2; AI481134; AI988017
    Expression
    Broad expression in testis adult (RPKM 133.4), liver E14.5 (RPKM 36.5) and 27 other tissues See more
    Orthologs

    Genomic context

    See Ptdss2 in Genome Data Viewer
    Location:
    7; 7 F5
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 7 NC_000073.6 (141131286..141156158)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 7 NC_000073.5 (148317185..148342053)

    Chromosome 7 - NC_000073.6Genomic Context describing neighboring genes Neighboring gene anoctamin 9 Neighboring gene predicted gene, 33560 Neighboring gene ribonuclease/angiogenin inhibitor 1 Neighboring gene ribosomal protein S9 pseudogene

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    Pathways from BioSystems

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    CDP-diacylglycerol-serine O-phosphatidyltransferase activity IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    transferase activity IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    lipid metabolic process IEA
    Inferred from Electronic Annotation
    more info
     
    phosphatidylserine biosynthetic process IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    phospholipid biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    endoplasmic reticulum IEA
    Inferred from Electronic Annotation
    more info
     
    endoplasmic reticulum membrane IDA
    Inferred from Direct Assay
    more info
    PubMed 
    integral component of membrane IEA
    Inferred from Electronic Annotation
    more info
     
    intracellular IDA
    Inferred from Direct Assay
    more info
    PubMed 
    membrane IDA
    Inferred from Direct Assay
    more info
    PubMed 

    General protein information

    Preferred Names
    phosphatidylserine synthase 2
    Names
    PSS-2
    ptdSer synthase 2
    serine-exchange enzyme II
    NP_038810.2
    XP_006536259.1
    XP_006536260.1
    XP_006536261.1
    XP_017177785.1

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_013782.4NP_038810.2  phosphatidylserine synthase 2

      See identical proteins and their annotated locations for NP_038810.2

      Status: PROVISIONAL

      Source sequence(s)
      AC108908, AC109272
      Consensus CDS
      CCDS22001.1
      UniProtKB/Swiss-Prot
      Q9Z1X2
      Related
      ENSMUSP00000026568.8, OTTMUSP00000053763, ENSMUST00000026568.9, OTTMUST00000096269
      Conserved Domains (1) summary
      pfam03034
      Location:98377
      PSS; Phosphatidyl serine synthase

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000073.6 Reference GRCm38.p4 C57BL/6J

      Range
      141131286..141156158
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006536196.3XP_006536259.1  phosphatidylserine synthase 2 isoform X1

      Conserved Domains (1) summary
      pfam03034
      Location:55308
      PSS; Phosphatidyl serine synthase
    2. XM_017322296.1XP_017177785.1  phosphatidylserine synthase 2 isoform X2

      Conserved Domains (1) summary
      pfam03034
      Location:1190
      PSS; Phosphatidyl serine synthase
    3. XM_006536197.1XP_006536260.1  phosphatidylserine synthase 2 isoform X2

      See identical proteins and their annotated locations for XP_006536260.1

      Conserved Domains (1) summary
      pfam03034
      Location:1190
      PSS; Phosphatidyl serine synthase
    4. XM_006536198.1XP_006536261.1  phosphatidylserine synthase 2 isoform X2

      See identical proteins and their annotated locations for XP_006536261.1

      Conserved Domains (1) summary
      pfam03034
      Location:1190
      PSS; Phosphatidyl serine synthase
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