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    Gyg glycogenin [ Mus musculus (house mouse) ]

    Gene ID: 27357, updated on 23-Jun-2021

    Summary

    Official Symbol
    Gygprovided by MGI
    Official Full Name
    glycogeninprovided by MGI
    Primary source
    MGI:MGI:1351614
    See related
    Ensembl:ENSMUSG00000019528
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    GN1; Gyg1; AU017667
    Expression
    Ubiquitous expression in heart adult (RPKM 43.0), lung adult (RPKM 28.8) and 24 other tissues See more
    Orthologs
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    Genomic context

    See Gyg in Genome Data Viewer
    Location:
    3 A2; 3 6.19 cM
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 3 NC_000069.7 (20176247..20209281, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 3 NC_000069.6 (20122083..20155117, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 3 NC_000069.5 (20021970..20054995, complement)

    Chromosome 3 - NC_000069.7Genomic Context describing neighboring genes Neighboring gene ceruloplasmin Neighboring gene HPS3, biogenesis of lysosomal organelles complex 2 subunit 1 Neighboring gene helicase-like transcription factor Neighboring gene VISTA enhancer mm86 Neighboring gene predicted gene, 31320 Neighboring gene microRNA 7007 Neighboring gene carboxypeptidase A3, mast cell Neighboring gene ribosomal protein S2 pseudogene

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (2) 

    Pathways from PubChem

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables UDP-alpha-D-glucose:glucosyl-glycogenin alpha-D-glucosyltransferase activity ISO
    Inferred from Sequence Orthology
    more info
     
    enables glucose binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables glycogenin glucosyltransferase activity ISO
    Inferred from Sequence Orthology
    more info
     
    enables glycosyltransferase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    enables manganese ion binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables protein homodimerization activity ISO
    Inferred from Sequence Orthology
    more info
     
    enables transferase activity IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    involved_in glycogen biosynthetic process IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    involved_in glycogen biosynthetic process ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    glycogenin-1
    NP_001342190.1
    NP_038783.1
    XP_006535545.1
    XP_030108500.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001355261.1NP_001342190.1  glycogenin-1 isoform 1

      Status: VALIDATED

      Source sequence(s)
      AA553085, AC158937, AK159576
      Related
      ENSMUSP00000138949.2, ENSMUST00000184552.2
      Conserved Domains (1) summary
      cd02537
      Location:4254
      GT8_Glycogenin; Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen
    2. NM_013755.4NP_038783.1  glycogenin-1 isoform 2

      See identical proteins and their annotated locations for NP_038783.1

      Status: VALIDATED

      Source sequence(s)
      AA553085, AC158937, AK159576
      Consensus CDS
      CCDS50873.1
      UniProtKB/Swiss-Prot
      Q9R062
      Related
      ENSMUSP00000136035.2, ENSMUST00000178328.8
      Conserved Domains (2) summary
      cd02537
      Location:4254
      GT8_Glycogenin; Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen
      COG1442
      Location:92221
      RfaJ; Lipopolysaccharide biosynthesis protein, LPS:glycosyltransferase [Cell wall/membrane/envelope biogenesis]

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000069.7 Reference GRCm39 C57BL/6J

      Range
      20176247..20209281 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_030252640.1XP_030108500.1  glycogenin-1 isoform X2

      Conserved Domains (1) summary
      cd02537
      Location:1220
      GT8_Glycogenin; Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen
    2. XM_006535482.4XP_006535545.1  glycogenin-1 isoform X1

      Conserved Domains (1) summary
      cd02537
      Location:1220
      GT8_Glycogenin; Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen
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