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    TNRC17 trinucleotide repeat containing 17 [ Homo sapiens (human) ]

    Gene ID: 27321, updated on 9-Jun-2025
    Official Symbol
    TNRC17provided by HGNC
    Official Full Name
    trinucleotide repeat containing 17provided by HGNC
    Primary source
    HGNC:HGNC:11961
    See related
    AllianceGenome:HGNC:11961
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    CAGL234
    NEW
    Try the new Gene table
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    See TNRC17 in Genome Data Viewer
    Location:
    2q37.2
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (235513740..235517921, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (236003332..236007527, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (236422384..236426565, complement)

    Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105373941 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr2:236302767-236303966 Neighboring gene CRISPRi-validated cis-regulatory element chr2.7130 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:236403941-236404814 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:236409110-236409715 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:236413687-236414193 Neighboring gene AGAP1 intronic transcript 1 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_57171 Neighboring gene ArfGAP with GTPase domain, ankyrin repeat and PH domain 1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:236475811-236476311 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:236494510-236495010 Neighboring gene Sharpr-MPRA regulatory region 15430 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:236505422-236506274 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:236539863-236540736 Neighboring gene Sharpr-MPRA regulatory region 12909 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:236567081-236567736 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:236599338-236599838 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:236599839-236600339 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr2:236617362-236618561 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:236632223-236632790 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:236632791-236633358 Neighboring gene uncharacterized LOC105373942 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:236696882-236697382 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:236701667-236702167 Neighboring gene Sharpr-MPRA regulatory region 1374 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr2:236735809-236737008 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:236757968-236758468 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr2:236763280-236764479 Neighboring gene VISTA enhancer hs521 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:236784736-236785236 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:236785237-236785737 Neighboring gene thymosin beta 10 pseudogene 1

    Go to nucleotide: Graphics FASTA GenBank

    Related articles in PubMed

    1. cDNAs with long CAG trinucleotide repeats from human brain. Margolis RL, et al. Hum Genet, 1997 Jul. PMID 9225980
    2. A protein interaction framework for human mRNA degradation. Lehner B, et al. Genome Res, 2004 Jul. PMID 15231747, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Review eQTL and phenotype association data in this region using PheGenI

    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    Products Interactant Other Gene Complex Source Pubs Description

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_146582.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC012305

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

      Range
      235513740..235517921 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060926.1 Alternate T2T-CHM13v2.0

      Range
      236003332..236007527 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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