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    Golga5 golgi autoantigen, golgin subfamily a, 5 [ Mus musculus (house mouse) ]

    Gene ID: 27277, updated on 23-Jun-2021

    Summary

    Official Symbol
    Golga5provided by MGI
    Official Full Name
    golgi autoantigen, golgin subfamily a, 5provided by MGI
    Primary source
    MGI:MGI:1351475
    See related
    Ensembl:ENSMUSG00000021192
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Ret; Ret-II
    Expression
    Ubiquitous expression in bladder adult (RPKM 11.9), testis adult (RPKM 11.5) and 28 other tissues See more
    Orthologs
    NEW
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    Try the new Transcript table

    Genomic context

    See Golga5 in Genome Data Viewer
    Location:
    12; 12 E
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 12 NC_000078.7 (102435372..102464274)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 12 NC_000078.6 (102469109..102498015)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 12 NC_000078.5 (103708120..103736117)

    Chromosome 12 - NC_000078.7Genomic Context describing neighboring genes Neighboring gene legumain Neighboring gene predicted gene, 30198 Neighboring gene chromogranin A Neighboring gene inositol 1,3,4-triphosphate 5/6 kinase Neighboring gene microRNA 1936

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (2) 
    • Endonuclease-mediated (3)  1 citation

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Clone Names

    • MGC102087

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    enables protein homodimerization activity ISO
    Inferred from Sequence Orthology
    more info
     
    enables protein-macromolecule adaptor activity ISO
    Inferred from Sequence Orthology
    more info
     
    enables small GTPase binding ISO
    Inferred from Sequence Orthology
    more info
     
    Process Evidence Code Pubs
    involved_in Golgi organization IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    involved_in Golgi organization ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in Golgi vesicle transport ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in retrograde transport, vesicle recycling within Golgi IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    involved_in retrograde transport, vesicle recycling within Golgi ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    located_in COPI-coated vesicle membrane ISO
    Inferred from Sequence Orthology
    more info
     
    located_in Golgi apparatus ISO
    Inferred from Sequence Orthology
    more info
     
    located_in Golgi cis cisterna ISO
    Inferred from Sequence Orthology
    more info
     
    is_active_in Golgi cisterna IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    located_in Golgi cisterna ISO
    Inferred from Sequence Orthology
    more info
     
    located_in Golgi medial cisterna ISO
    Inferred from Sequence Orthology
    more info
     
    is_active_in Golgi membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    located_in Golgi membrane IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in Golgi membrane ISO
    Inferred from Sequence Orthology
    more info
     
    located_in Golgi trans cisterna ISO
    Inferred from Sequence Orthology
    more info
     
    located_in cis-Golgi network ISO
    Inferred from Sequence Orthology
    more info
     
    located_in integral component of membrane ISO
    Inferred from Sequence Orthology
    more info
     
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    golgin subfamily A member 5
    Names
    golgi autoantigen golgin subfamily a5
    golgin-84
    protein Sumiko

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001199004.1NP_001185933.1  golgin subfamily A member 5

      See identical proteins and their annotated locations for NP_001185933.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript. Variants 1 and 2 encode the same protein.
      Source sequence(s)
      AK138455, BC086782
      Consensus CDS
      CCDS36526.1
      UniProtKB/Swiss-Prot
      Q9QYE6
      Related
      ENSMUSP00000137305.2, ENSMUST00000179218.9
      Conserved Domains (2) summary
      COG1196
      Location:231565
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      pfam09787
      Location:418723
      Golgin_A5; Golgin subfamily A member 5
    2. NM_013747.4NP_038775.1  golgin subfamily A member 5

      See identical proteins and their annotated locations for NP_038775.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) differs in the 5' UTR, compared to variant 1. Variants 1 and 2 encode the same protein.
      Source sequence(s)
      BC086782
      Consensus CDS
      CCDS36526.1
      UniProtKB/Swiss-Prot
      Q9QYE6
      Related
      ENSMUSP00000021609.9, ENSMUST00000021609.10
      Conserved Domains (2) summary
      COG1196
      Location:231565
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      pfam09787
      Location:418723
      Golgin_A5; Golgin subfamily A member 5

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000078.7 Reference GRCm39 C57BL/6J

      Range
      102435372..102464274
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006515935.5XP_006515998.1  golgin subfamily A member 5 isoform X1

      See identical proteins and their annotated locations for XP_006515998.1

      UniProtKB/Swiss-Prot
      Q9QYE6
      Conserved Domains (2) summary
      COG1196
      Location:231565
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      pfam09787
      Location:418723
      Golgin_A5; Golgin subfamily A member 5
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