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    Rps11 ribosomal protein S11 [ Mus musculus (house mouse) ]

    Gene ID: 27207, updated on 9-Sep-2018

    Summary

    Official Symbol
    Rps11provided by MGI
    Official Full Name
    ribosomal protein S11provided by MGI
    Primary source
    MGI:MGI:1351329
    See related
    Ensembl:ENSMUSG00000003429 Vega:OTTMUSG00000058711
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Expression
    Ubiquitous expression in placenta adult (RPKM 303.2), bladder adult (RPKM 302.0) and 28 other tissues See more
    Orthologs

    Genomic context

    See Rps11 in Genome Data Viewer
    Location:
    7; 7 B3
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 7 NC_000073.6 (45122388..45124389, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 7 NC_000073.5 (52377758..52379759, complement)

    Chromosome 7 - NC_000073.6Genomic Context describing neighboring genes Neighboring gene Fc receptor, IgG, alpha chain transporter Neighboring gene microRNA 150 Neighboring gene small nucleolar RNA, C/D box 35B Neighboring gene small nucleolar RNA, C/D box 35A Neighboring gene ribosomal protein L13A Neighboring gene small nucleolar RNA, C/D box 34

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Pathways from BioSystems

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    RNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    rRNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    structural constituent of ribosome IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Process Evidence Code Pubs
    translation IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    cytosolic small ribosomal subunit IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    cytosolic small ribosomal subunit ISO
    Inferred from Sequence Orthology
    more info
     
    intracellular IEA
    Inferred from Electronic Annotation
    more info
     
    ribosome IEA
    Inferred from Electronic Annotation
    more info
     

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_013725.4NP_038753.1  40S ribosomal protein S11

      See identical proteins and their annotated locations for NP_038753.1

      Status: VALIDATED

      Source sequence(s)
      AK150738, CJ044201
      Consensus CDS
      CCDS39947.1
      UniProtKB/Swiss-Prot
      P62281
      UniProtKB/TrEMBL
      Q3UC02
      Related
      ENSMUSP00000003521.8, OTTMUSP00000075211, ENSMUST00000003521.9, OTTMUST00000144228
      Conserved Domains (1) summary
      PTZ00241
      Location:1158
      PTZ00241; 40S ribosomal protein S11; Provisional

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000073.6 Reference GRCm38.p4 C57BL/6J

      Range
      45122388..45124389 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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