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    Rps11 ribosomal protein S11 [ Mus musculus (house mouse) ]

    Gene ID: 27207, updated on 26-Sep-2022

    Summary

    Official Symbol
    Rps11provided by MGI
    Official Full Name
    ribosomal protein S11provided by MGI
    Primary source
    MGI:MGI:1351329
    See related
    Ensembl:ENSMUSG00000003429 AllianceGenome:MGI:1351329
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Summary
    Predicted to be a structural constituent of ribosome. Predicted to be involved in translation. Predicted to be located in cytosolic ribosome. Predicted to be part of cytosolic small ribosomal subunit. Is expressed in cerebral cortex subventricular zone; cerebral cortex ventricular layer; cortical plate; and pancreas epithelium. Orthologous to human RPS11 (ribosomal protein S11). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Ubiquitous expression in placenta adult (RPKM 303.2), bladder adult (RPKM 302.0) and 28 other tissues See more
    Orthologs
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    Genomic context

    See Rps11 in Genome Data Viewer
    Location:
    7; 7 B3
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (44771812..44773813, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (45122388..45124389, complement)

    Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene Fc fragment of IgG receptor and transporter Neighboring gene predicted gene 45552 Neighboring gene microRNA 150 Neighboring gene small nucleolar RNA, C/D box 35B Neighboring gene small nucleolar RNA, C/D box 35A Neighboring gene ribosomal protein L13A Neighboring gene small nucleolar RNA, C/D box 34

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Pathways from PubChem

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables rRNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables structural constituent of ribosome IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    enables structural constituent of ribosome ISO
    Inferred from Sequence Orthology
    more info
     
    Process Evidence Code Pubs
    involved_in cytoplasmic translation IC
    Inferred by Curator
    more info
    PubMed 
    involved_in translation IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in translation at postsynapse NAS
    Non-traceable Author Statement
    more info
    PubMed 
    involved_in translation at presynapse NAS
    Non-traceable Author Statement
    more info
    PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IC
    Inferred by Curator
    more info
    PubMed 
    located_in cytosol TAS
    Traceable Author Statement
    more info
     
    located_in cytosolic ribosome ISO
    Inferred from Sequence Orthology
    more info
     
    part_of cytosolic small ribosomal subunit IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    part_of cytosolic small ribosomal subunit IC
    Inferred by Curator
    more info
    PubMed 
    part_of cytosolic small ribosomal subunit ISO
    Inferred from Sequence Orthology
    more info
     
    is_active_in postsynapse NAS
    Non-traceable Author Statement
    more info
    PubMed 
    is_active_in presynapse NAS
    Non-traceable Author Statement
    more info
    PubMed 
    is_active_in ribosome NAS
    Non-traceable Author Statement
    more info
    PubMed 
    is_active_in synapse EXP
    Inferred from Experiment
    more info
    PubMed 
    is_active_in synapse IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in synapse NAS
    Non-traceable Author Statement
    more info
    PubMed 

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_013725.4NP_038753.1  40S ribosomal protein S11

      See identical proteins and their annotated locations for NP_038753.1

      Status: VALIDATED

      Source sequence(s)
      AK150738, CJ044201
      Consensus CDS
      CCDS39947.1
      UniProtKB/Swiss-Prot
      P04643, P62281
      UniProtKB/TrEMBL
      A0A6P5Q2J9, A0A8C6HPQ5, Q3UC02
      Related
      ENSMUSP00000003521.9, ENSMUST00000003521.10
      Conserved Domains (1) summary
      PTZ00241
      Location:1158
      PTZ00241; 40S ribosomal protein S11; Provisional

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000073.7 Reference GRCm39 C57BL/6J

      Range
      44771812..44773813 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)