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    Trappc3 trafficking protein particle complex 3 [ Mus musculus (house mouse) ]

    Gene ID: 27096, updated on 23-Jun-2021

    Summary

    Official Symbol
    Trappc3provided by MGI
    Official Full Name
    trafficking protein particle complex 3provided by MGI
    Primary source
    MGI:MGI:1351486
    See related
    Ensembl:ENSMUSG00000028847
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Bet3; AI835942; AU019197; 1110058K12Rik
    Expression
    Ubiquitous expression in CNS E18 (RPKM 47.0), CNS E14 (RPKM 41.9) and 28 other tissues See more
    Orthologs
    NEW
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    Try the new Transcript table

    Genomic context

    See Trappc3 in Genome Data Viewer
    Location:
    4; 4 D2.2
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 4 NC_000070.7 (126156198..126169676)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 4 NC_000070.6 (126262405..126275883)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 4 NC_000070.5 (125939649..125953127)

    Chromosome 4 - NC_000070.7Genomic Context describing neighboring genes Neighboring gene thyroid hormone receptor associated protein 3 Neighboring gene predicted gene, 25323 Neighboring gene MAP7 domain containing 1 Neighboring gene predicted gene, 54258 Neighboring gene collagen, type VIII, alpha 2 Neighboring gene ADP-ribosylserine hydrolase

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Pathways from PubChem

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    Component Evidence Code Pubs
    located_in Golgi apparatus ISO
    Inferred from Sequence Orthology
    more info
     
    located_in Golgi membrane IDA
    Inferred from Direct Assay
    more info
    PubMed 
    part_of TRAPP complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    part_of TRAPP complex IDA
    Inferred from Direct Assay
    more info
    PubMed 
    part_of TRAPP complex ISO
    Inferred from Sequence Orthology
    more info
     
    is_active_in cis-Golgi network membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    is_active_in cytosol IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    located_in cytosol IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in cytosol ISO
    Inferred from Sequence Orthology
    more info
     
    located_in endoplasmic reticulum IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    trafficking protein particle complex subunit 3
    Names
    Bet3 homolog

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_013718.2NP_038746.1  trafficking protein particle complex subunit 3

      See identical proteins and their annotated locations for NP_038746.1

      Status: PROVISIONAL

      Source sequence(s)
      BC003736
      Consensus CDS
      CCDS18647.1
      UniProtKB/Swiss-Prot
      O55013
      UniProtKB/TrEMBL
      Q3U9K9
      Related
      ENSMUSP00000030660.9, ENSMUST00000030660.9
      Conserved Domains (1) summary
      cd14942
      Location:15169
      TRAPPC3_bet3; Bet3-TRAPPC3 subunit of the TRAPP complex

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000070.7 Reference GRCm39 C57BL/6J

      Range
      126156198..126169676
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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