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    Nkapd1 NKAP domain containing 1 [ Mus musculus (house mouse) ]

    Gene ID: 270156, updated on 19-Feb-2019

    Summary

    Official Symbol
    Nkapd1provided by MGI
    Official Full Name
    NKAP domain containing 1provided by MGI
    Primary source
    MGI:MGI:2143205
    See related
    Ensembl:ENSMUSG00000059820
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Gm639; AU019823
    Expression
    Ubiquitous expression in kidney adult (RPKM 8.0), CNS E11.5 (RPKM 6.6) and 28 other tissues See more
    Orthologs

    Genomic context

    See Nkapd1 in Genome Data Viewer
    Location:
    9; 9 A5.3
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 9 NC_000075.6 (50605240..50617464, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 9 NC_000075.5 (50413345..50425569, complement)

    Chromosome 9 - NC_000075.6Genomic Context describing neighboring genes Neighboring gene interleukin 18 Neighboring gene testis expressed 12 Neighboring gene succinate dehydrogenase complex, subunit D, integral membrane protein Neighboring gene translocase of inner mitochondrial membrane 8B Neighboring gene PIH1 domain containing 2 Neighboring gene dihydrolipoamide S-acetyltransferase (E2 component of pyruvate dehydrogenase complex) Neighboring gene RIKEN cDNA 3110005L24 gene

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    cellular_component ND
    No biological Data available
    more info
     

    General protein information

    Preferred Names
    uncharacterized protein C11orf57 homolog

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001134902.1NP_001128374.1  uncharacterized protein C11orf57 homolog

      See identical proteins and their annotated locations for NP_001128374.1

      Status: VALIDATED

      Source sequence(s)
      BC067205, BY740784, CJ142322
      Consensus CDS
      CCDS23166.2
      UniProtKB/TrEMBL
      E9PUQ3, Q6NX79
      Related
      ENSMUSP00000133259.1, ENSMUST00000171462.7
      Conserved Domains (1) summary
      pfam15692
      Location:93147
      NKAP; NF-kappa-B-activating protein
    2. NM_001360340.1NP_001347269.1  uncharacterized protein C11orf57 homolog

      Status: VALIDATED

      Source sequence(s)
      AC025500, BC067205
      Conserved Domains (1) summary
      pfam15692
      Location:93147
      NKAP; NF-kappa-B-activating protein
    3. NM_212449.2NP_997614.2  uncharacterized protein C11orf57 homolog

      See identical proteins and their annotated locations for NP_997614.2

      Status: VALIDATED

      Source sequence(s)
      BC067205, CJ142322
      Consensus CDS
      CCDS23166.2
      UniProtKB/TrEMBL
      E9PUQ3, Q6NX79
      Related
      ENSMUSP00000123319.1, ENSMUST00000131351.7
      Conserved Domains (1) summary
      pfam15692
      Location:93147
      NKAP; NF-kappa-B-activating protein

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000075.6 Reference GRCm38.p4 C57BL/6J

      Range
      50605240..50617464 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_011242546.2XP_011240848.1  uncharacterized protein C11orf57 homolog isoform X2

      Conserved Domains (1) summary
      pfam15692
      Location:86146
      NKAP; NF-kappa-B-activating protein
    2. XM_011242545.2XP_011240847.1  uncharacterized protein C11orf57 homolog isoform X1

      UniProtKB/TrEMBL
      E9PUQ3
      Conserved Domains (1) summary
      pfam15692
      Location:93147
      NKAP; NF-kappa-B-activating protein
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