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    Golga3 golgi autoantigen, golgin subfamily a, 3 [ Mus musculus (house mouse) ]

    Gene ID: 269682, updated on 23-Jun-2021

    Summary

    Official Symbol
    Golga3provided by MGI
    Official Full Name
    golgi autoantigen, golgin subfamily a, 3provided by MGI
    Primary source
    MGI:MGI:96958
    See related
    Ensembl:ENSMUSG00000029502
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Mea; rep; Mea-; Mea2; Mea-2; repro27; AI449376; AW490576; G1-499-14; 5330413L04; Mea2/Golga3; 5430416E01Rik
    Expression
    Ubiquitous expression in testis adult (RPKM 11.9), bladder adult (RPKM 5.9) and 28 other tissues See more
    Orthologs
    NEW
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    Genomic context

    See Golga3 in Genome Data Viewer
    Location:
    5 F; 5 53.36 cM
    Exon count:
    25
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 5 NC_000071.7 (110324723..110374336)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 5 NC_000071.6 (110176857..110226470)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 5 NC_000071.5 (110605720..110652174)

    Chromosome 5 - NC_000071.7Genomic Context describing neighboring genes Neighboring gene zinc finger protein 605 Neighboring gene nucleophosmin pseudogene Neighboring gene checkpoint with forkhead and ring finger domains Neighboring gene predicted gene 15787 Neighboring gene uncharacterized LOC118568795 Neighboring gene ankyrin repeat and LEM domain containing 2 Neighboring gene phosphoglycerate mutase family member 5

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Transgenic (1)  1 citation
    • Targeted (2) 
    • Chemically induced (ENU) (1) 

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within cell differentiation IEA
    Inferred from Electronic Annotation
    more info
     
    acts_upstream_of_or_within multicellular organism development IEA
    Inferred from Electronic Annotation
    more info
     
    acts_upstream_of_or_within spermatogenesis IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in spermatogenesis IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    is_active_in Golgi apparatus IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    located_in Golgi apparatus ISO
    Inferred from Sequence Orthology
    more info
     
    located_in Golgi membrane IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
     
    located_in cytosol ISO
    Inferred from Sequence Orthology
    more info
     
    located_in endoplasmic reticulum-Golgi intermediate compartment IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in extrinsic component of Golgi membrane ISO
    Inferred from Sequence Orthology
    more info
     
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
     
    located_in nucleolus ISO
    Inferred from Sequence Orthology
    more info
     
    located_in nucleoplasm ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    golgin subfamily A member 3
    Names
    golgin-160
    male-enhanced antigen 2

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001347389.2NP_001334318.1  golgin subfamily A member 3 isoform 1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
      Source sequence(s)
      AC118260
      Consensus CDS
      CCDS84928.1
      UniProtKB/TrEMBL
      E9QP99
      Related
      ENSMUSP00000031477.9, ENSMUST00000031477.9
      Conserved Domains (2) summary
      COG1196
      Location:6221357
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      TIGR02169
      Location:431771
      SMC_prok_A; chromosome segregation protein SMC, primarily archaeal type
    2. NM_008146.4NP_032172.3  golgin subfamily A member 3 isoform 2

      See identical proteins and their annotated locations for NP_032172.3

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) uses an alternate in-frame splice junction compared to variant 1. The resulting isoform (2) has the same N- and C-termini but is shorter compared to isoform 1.
      Source sequence(s)
      AC118260, AW490576, BC053002
      Consensus CDS
      CCDS39209.1
      UniProtKB/Swiss-Prot
      P55937
      UniProtKB/TrEMBL
      A0A0R4J1H6
      Related
      ENSMUSP00000108131.2, ENSMUST00000112512.8
      Conserved Domains (2) summary
      COG1196
      Location:5821317
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      TIGR02168
      Location:353724
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000071.7 Reference GRCm39 C57BL/6J

      Range
      110324723..110374336
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006534961.5XP_006535024.1  golgin subfamily A member 3 isoform X1

      See identical proteins and their annotated locations for XP_006535024.1

      UniProtKB/TrEMBL
      E9QP99
      Conserved Domains (2) summary
      COG1196
      Location:6221357
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      TIGR02169
      Location:431771
      SMC_prok_A; chromosome segregation protein SMC, primarily archaeal type
    2. XM_030254534.2XP_030110394.1  golgin subfamily A member 3 isoform X2

      Conserved Domains (2) summary
      COG1196
      Location:5821317
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      TIGR02168
      Location:353724
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    3. XM_006534962.4XP_006535025.1  golgin subfamily A member 3 isoform X1

      See identical proteins and their annotated locations for XP_006535025.1

      UniProtKB/TrEMBL
      E9QP99
      Conserved Domains (2) summary
      COG1196
      Location:6221357
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      TIGR02169
      Location:431771
      SMC_prok_A; chromosome segregation protein SMC, primarily archaeal type
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