Format

Send to:

Choose Destination
    • Showing Current items.

    Golga3 golgi autoantigen, golgin subfamily a, 3 [ Mus musculus (house mouse) ]

    Gene ID: 269682, updated on 12-Aug-2018

    Summary

    Official Symbol
    Golga3provided by MGI
    Official Full Name
    golgi autoantigen, golgin subfamily a, 3provided by MGI
    Primary source
    MGI:MGI:96958
    See related
    Ensembl:ENSMUSG00000029502 Vega:OTTMUSG00000026197
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Mea2; Mea-2; repro27; AI449376; AW490576; G1-499-14; 5330413L04; Mea2/Golga3; 5430416E01Rik
    Expression
    Ubiquitous expression in testis adult (RPKM 11.9), bladder adult (RPKM 5.9) and 28 other tissues See more
    Orthologs

    Genomic context

    See Golga3 in Genome Data Viewer
    Location:
    5 F; 5 53.36 cM
    Exon count:
    25
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 5 NC_000071.6 (110176658..110226470)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 5 NC_000071.5 (110605720..110652174)

    Chromosome 5 - NC_000071.6Genomic Context describing neighboring genes Neighboring gene nucleophosmin pseudogene Neighboring gene zinc finger protein 605 Neighboring gene checkpoint with forkhead and ring finger domains Neighboring gene predicted gene 15787 Neighboring gene uncharacterized LOC105246962 Neighboring gene ankyrin repeat and LEM domain containing 2

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Transgenic (1)  1 citation
    • Targeted (2) 
    • Chemically induced (ENU) (1) 

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    Process Evidence Code Pubs
    cell differentiation IEA
    Inferred from Electronic Annotation
    more info
     
    multicellular organism development IEA
    Inferred from Electronic Annotation
    more info
     
    spermatogenesis IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    Golgi apparatus IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Golgi apparatus ISO
    Inferred from Sequence Orthology
    more info
     
    Golgi membrane IDA
    Inferred from Direct Assay
    more info
    PubMed 
    Golgi transport complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Golgi transport complex ISO
    Inferred from Sequence Orthology
    more info
     
    cytoplasm IEA
    Inferred from Electronic Annotation
    more info
     
    cytosol ISO
    Inferred from Sequence Orthology
    more info
     
    endoplasmic reticulum-Golgi intermediate compartment IDA
    Inferred from Direct Assay
    more info
    PubMed 
    extrinsic component of Golgi membrane ISO
    Inferred from Sequence Orthology
    more info
     
    membrane IEA
    Inferred from Electronic Annotation
    more info
     
    nucleolus ISO
    Inferred from Sequence Orthology
    more info
     
    nucleoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    nucleoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    nucleus ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    golgin subfamily A member 3
    Names
    golgin-160
    male-enhanced antigen 2

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001347389.2NP_001334318.1  golgin subfamily A member 3 isoform 1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
      Source sequence(s)
      AC118260
      Consensus CDS
      CCDS84928.1
      UniProtKB/TrEMBL
      E9QP99
    2. NM_008146.4NP_032172.3  golgin subfamily A member 3 isoform 2

      See identical proteins and their annotated locations for NP_032172.3

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) uses an alternate in-frame splice junction compared to variant 1. The resulting isoform (2) has the same N- and C-termini but is shorter compared to isoform 1.
      Source sequence(s)
      AC118260, AW490576, BC053002
      Consensus CDS
      CCDS39209.1
      UniProtKB/Swiss-Prot
      P55937
      UniProtKB/TrEMBL
      A0A0R4J1H6
      Related
      ENSMUSP00000108131.1, OTTMUSP00000032193, ENSMUST00000112512.7
      Conserved Domains (2) summary
      pfam01576
      Location:3521306
      Myosin_tail_1; Myosin tail
      cl19872
      Location:561854
      DUF885; Bacterial protein of unknown function (DUF885)

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000071.6 Reference GRCm38.p4 C57BL/6J

      Range
      110176658..110226470
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006534961.3XP_006535024.1  golgin subfamily A member 3 isoform X1

      See identical proteins and their annotated locations for XP_006535024.1

      UniProtKB/TrEMBL
      E9QP99
      Conserved Domains (2) summary
      pfam01576
      Location:3921346
      Myosin_tail_1; Myosin tail
      cl19872
      Location:601894
      DUF885; Bacterial protein of unknown function (DUF885)
    2. XM_006534960.3XP_006535023.1  golgin subfamily A member 3 isoform X1

      Related
      ENSMUSP00000031477.8, OTTMUSP00000032221, ENSMUST00000031477.8, OTTMUST00000064809
      Conserved Domains (2) summary
      pfam01576
      Location:3921346
      Myosin_tail_1; Myosin tail
      cl19872
      Location:601894
      DUF885; Bacterial protein of unknown function (DUF885)
    3. XM_006534962.3XP_006535025.1  golgin subfamily A member 3 isoform X1

      See identical proteins and their annotated locations for XP_006535025.1

      UniProtKB/TrEMBL
      E9QP99
      Conserved Domains (2) summary
      pfam01576
      Location:3921346
      Myosin_tail_1; Myosin tail
      cl19872
      Location:601894
      DUF885; Bacterial protein of unknown function (DUF885)
    Support Center