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    Clspn claspin [ Mus musculus (house mouse) ]

    Gene ID: 269582, updated on 31-Jan-2019

    Summary

    Official Symbol
    Clspnprovided by MGI
    Official Full Name
    claspinprovided by MGI
    Primary source
    MGI:MGI:2445153
    See related
    Ensembl:ENSMUSG00000042489
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    C85083; B130025E01; E130314M08Rik
    Expression
    Biased expression in CNS E11.5 (RPKM 13.6), liver E14 (RPKM 12.3) and 10 other tissues See more
    Orthologs

    Genomic context

    See Clspn in Genome Data Viewer
    Location:
    4; 4 D2.2
    Exon count:
    26
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 4 NC_000070.6 (126556951..126594533)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 4 NC_000070.5 (126234224..126271147)

    Chromosome 4 - NC_000070.6Genomic Context describing neighboring genes Neighboring gene argonaute RISC catalytic subunit 1 Neighboring gene argonaute RISC catalytic subunit 4 Neighboring gene microRNA 7119 Neighboring gene 60S ribosomal protein L36a-like Neighboring gene RIKEN cDNA 5730409E04Rik gene Neighboring gene predicted gene, 40250 Neighboring gene predicted gene, 46870

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    Pathways from BioSystems

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    DNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    DNA secondary structure binding ISO
    Inferred from Sequence Orthology
    more info
     
    anaphase-promoting complex binding ISO
    Inferred from Sequence Orthology
    more info
     
    Process Evidence Code Pubs
    DNA damage checkpoint ISO
    Inferred from Sequence Orthology
    more info
     
    DNA repair IEA
    Inferred from Electronic Annotation
    more info
     
    DNA replication checkpoint ISO
    Inferred from Sequence Orthology
    more info
     
    activation of protein kinase activity ISO
    Inferred from Sequence Orthology
    more info
     
    cell cycle IEA
    Inferred from Electronic Annotation
    more info
     
    cellular response to DNA damage stimulus IEA
    Inferred from Electronic Annotation
    more info
     
    mitotic DNA replication checkpoint ISO
    Inferred from Sequence Orthology
    more info
     
    mitotic G2 DNA damage checkpoint ISO
    Inferred from Sequence Orthology
    more info
     
    peptidyl-serine phosphorylation ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    Golgi apparatus ISO
    Inferred from Sequence Orthology
    more info
     
    chromosome IEA
    Inferred from Electronic Annotation
    more info
     
    nucleoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    nucleus ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    claspin
    Names
    claspin homolog

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_175554.4NP_780763.3  claspin

      See identical proteins and their annotated locations for NP_780763.3

      Status: VALIDATED

      Source sequence(s)
      AL606935, BC050848, CF535627
      Consensus CDS
      CCDS18655.1
      UniProtKB/Swiss-Prot
      Q80YR7
      Related
      ENSMUSP00000045344.8, ENSMUST00000048391.14

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000070.6 Reference GRCm38.p4 C57BL/6J

      Range
      126556951..126594533
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006503124.2XP_006503187.1  claspin isoform X1

      See identical proteins and their annotated locations for XP_006503187.1

    2. XM_011240540.2XP_011238842.1  claspin isoform X1

      See identical proteins and their annotated locations for XP_011238842.1

    3. XM_006503123.3XP_006503186.1  claspin isoform X1

      See identical proteins and their annotated locations for XP_006503186.1

    4. XM_006503122.3XP_006503185.1  claspin isoform X1

      See identical proteins and their annotated locations for XP_006503185.1

    5. XM_011240541.2XP_011238843.1  claspin isoform X3

      See identical proteins and their annotated locations for XP_011238843.1

      UniProtKB/Swiss-Prot
      Q80YR7
    6. XM_006503125.3XP_006503188.1  claspin isoform X2

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