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    Clspn claspin [ Mus musculus (house mouse) ]

    Gene ID: 269582, updated on 23-Jun-2021

    Summary

    Official Symbol
    Clspnprovided by MGI
    Official Full Name
    claspinprovided by MGI
    Primary source
    MGI:MGI:2445153
    See related
    Ensembl:ENSMUSG00000042489
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    C85083; B130025E01; E130314M08Rik
    Expression
    Biased expression in CNS E11.5 (RPKM 13.6), liver E14 (RPKM 12.3) and 10 other tissues See more
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See Clspn in Genome Data Viewer
    Location:
    4; 4 D2.2
    Exon count:
    26
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 4 NC_000070.7 (126450738..126488326)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 4 NC_000070.6 (126556957..126594533)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 4 NC_000070.5 (126234224..126271147)

    Chromosome 4 - NC_000070.7Genomic Context describing neighboring genes Neighboring gene argonaute RISC catalytic subunit 1 Neighboring gene argonaute RISC catalytic subunit 4 Neighboring gene microRNA 7119 Neighboring gene 60S ribosomal protein L36a-like Neighboring gene RIKEN cDNA 5730409E04Rik gene Neighboring gene predicted gene, 46870

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    Pathways from PubChem

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables DNA secondary structure binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables anaphase-promoting complex binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    enables anaphase-promoting complex binding ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    located_in Golgi apparatus ISO
    Inferred from Sequence Orthology
    more info
     
    located_in chromosome IEA
    Inferred from Electronic Annotation
    more info
     
    located_in nucleoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    located_in nucleus ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    claspin
    Names
    claspin homolog

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_175554.4NP_780763.3  claspin

      See identical proteins and their annotated locations for NP_780763.3

      Status: VALIDATED

      Source sequence(s)
      AL606935, BC050848, CF535627
      Consensus CDS
      CCDS18655.1
      UniProtKB/Swiss-Prot
      Q80YR7
      Related
      ENSMUSP00000045344.9, ENSMUST00000048391.15

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000070.7 Reference GRCm39 C57BL/6J

      Range
      126450738..126488326
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006503124.4XP_006503187.1  claspin isoform X1

      See identical proteins and their annotated locations for XP_006503187.1

    2. XM_011240540.4XP_011238842.1  claspin isoform X1

      See identical proteins and their annotated locations for XP_011238842.1

    3. XM_011240541.4XP_011238843.1  claspin isoform X3

      See identical proteins and their annotated locations for XP_011238843.1

      UniProtKB/Swiss-Prot
      Q80YR7
    4. XM_006503123.5XP_006503186.1  claspin isoform X1

      See identical proteins and their annotated locations for XP_006503186.1

    5. XM_006503122.5XP_006503185.1  claspin isoform X1

      See identical proteins and their annotated locations for XP_006503185.1

    6. XM_006503125.4XP_006503188.1  claspin isoform X2

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