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    Ell3 elongation factor RNA polymerase II-like 3 [ Mus musculus (house mouse) ]

    Gene ID: 269344, updated on 31-Jan-2019

    Summary

    Official Symbol
    Ell3provided by MGI
    Official Full Name
    elongation factor RNA polymerase II-like 3provided by MGI
    Primary source
    MGI:MGI:2673679
    See related
    Ensembl:ENSMUSG00000027246
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    A930015D22Rik
    Expression
    Broad expression in spleen adult (RPKM 10.8), kidney adult (RPKM 6.6) and 20 other tissues See more
    Orthologs

    Genomic context

    See Ell3 in Genome Data Viewer
    Location:
    2; 2 E5
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 2 NC_000068.7 (121439027..121442601, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 2 NC_000068.6 (121264763..121268337, complement)

    Chromosome 2 - NC_000068.7Genomic Context describing neighboring genes Neighboring gene creatine kinase, mitochondrial 1, ubiquitous Neighboring gene stereocilin Neighboring gene cation channel, sperm associated 2 Neighboring gene protein disulfide isomerase associated 3 Neighboring gene serine incorporator 4 Neighboring gene small EDRK-rich factor 2 Neighboring gene huntingtin interacting protein K

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (2) 

    Pathways from BioSystems

    General gene information

    Markers

    Homology

    Clone Names

    • MGC31450

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enhancer binding IDA
    Inferred from Direct Assay
    more info
    PubMed 
    protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    Component Evidence Code Pubs
    nucleolus ISO
    Inferred from Sequence Orthology
    more info
     
    nucleoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    nucleus IDA
    Inferred from Direct Assay
    more info
    PubMed 
    nucleus ISO
    Inferred from Sequence Orthology
    more info
     
    transcription elongation factor complex ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    RNA polymerase II elongation factor ELL3

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_145973.2NP_666085.2  RNA polymerase II elongation factor ELL3

      See identical proteins and their annotated locations for NP_666085.2

      Status: PROVISIONAL

      Source sequence(s)
      BC045151
      Consensus CDS
      CCDS16644.1
      UniProtKB/Swiss-Prot
      Q80VR2
      Related
      ENSMUSP00000112133.1, ENSMUST00000116432.1
      Conserved Domains (1) summary
      pfam07303
      Location:292389
      Occludin_ELL; Occludin homology domain

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000068.7 Reference GRCm38.p4 C57BL/6J

      Range
      121439027..121442601 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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