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    Colgalt2 collagen beta(1-O)galactosyltransferase 2 [ Mus musculus (house mouse) ]

    Gene ID: 269132, updated on 12-May-2024

    Summary

    Official Symbol
    Colgalt2provided by MGI
    Official Full Name
    collagen beta(1-O)galactosyltransferase 2provided by MGI
    Primary source
    MGI:MGI:2138232
    See related
    Ensembl:ENSMUSG00000032649 AllianceGenome:MGI:2138232
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Glt25d2; D730024P12
    Summary
    Predicted to enable procollagen galactosyltransferase activity. Predicted to be located in endoplasmic reticulum. Is expressed in axial skeleton; central nervous system; and retina. Orthologous to human COLGALT2 (collagen beta(1-O)galactosyltransferase 2). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Broad expression in lung adult (RPKM 5.4), limb E14.5 (RPKM 4.9) and 16 other tissues See more
    Orthologs
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    Genomic context

    See Colgalt2 in Genome Data Viewer
    Location:
    1 G2; 1 64.77 cM
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 1 NC_000067.7 (152275485..152386942)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 1 NC_000067.6 (152399805..152510695)

    Chromosome 1 - NC_000067.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 41970 Neighboring gene tRNA splicing endonuclease subunit 15 Neighboring gene basic transcription factor 3, pseudogene 14 Neighboring gene STARR-positive B cell enhancer ABC_E10046 Neighboring gene ral guanine nucleotide dissociation stimulator,-like 1 Neighboring gene predicted gene, 51749 Neighboring gene STARR-seq mESC enhancer starr_02640 Neighboring gene STARR-seq mESC enhancer starr_02641 Neighboring gene ornithine decarboxylase, structural 1 pseudogene

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables glycosyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
     
    enables procollagen galactosyltransferase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables transferase activity IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
     
    located_in endoplasmic reticulum IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    procollagen galactosyltransferase 2
    Names
    glycosyltransferase 25 domain containing 2
    glycosyltransferase 25 family member 2
    hydroxylysine galactosyltransferase 2
    NP_001408051.1
    NP_808424.3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001421122.1NP_001408051.1  procollagen galactosyltransferase 2 isoform 2 precursor

      Status: VALIDATED

      Source sequence(s)
      AC123732
    2. NM_177756.5NP_808424.3  procollagen galactosyltransferase 2 isoform 1 precursor

      See identical proteins and their annotated locations for NP_808424.3

      Status: VALIDATED

      Source sequence(s)
      AC123732
      Consensus CDS
      CCDS15364.1
      UniProtKB/Swiss-Prot
      Q6NVG7, Q8BWD4
      Related
      ENSMUSP00000037532.9, ENSMUST00000044311.9
      Conserved Domains (2) summary
      pfam13704
      Location:61174
      Glyco_tranf_2_4; Glycosyl transferase family 2
      cl01298
      Location:340525
      Glyco_transf_25; Glycosyltransferase family 25 [lipooligosaccharide (LOS) biosynthesis protein] is a family of glycosyltransferases involved in LOS biosynthesis. The members include the beta(1,4) galactosyltransferases: Lgt2 of Moraxella catarrhalis, LgtB and LgtE of ...

    RNA

    1. NR_185244.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC123732

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000067.7 Reference GRCm39 C57BL/6J

      Range
      152275485..152386942
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_004942548.1 RNA Sequence