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    Colgalt2 collagen beta(1-O)galactosyltransferase 2 [ Mus musculus (house mouse) ]

    Gene ID: 269132, updated on 9-Sep-2018

    Summary

    Official Symbol
    Colgalt2provided by MGI
    Official Full Name
    collagen beta(1-O)galactosyltransferase 2provided by MGI
    Primary source
    MGI:MGI:2138232
    See related
    Ensembl:ENSMUSG00000032649 Vega:OTTMUSG00000024393
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Glt25d2; AI427652; D730024P12
    Expression
    Broad expression in lung adult (RPKM 5.4), limb E14.5 (RPKM 4.9) and 16 other tissues See more
    Orthologs

    Genomic context

    See Colgalt2 in Genome Data Viewer
    Location:
    1; 1 G2
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 1 NC_000067.6 (152399805..152510695)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 1 NC_000067.5 (154246997..154357825)

    Chromosome 1 - NC_000067.6Genomic Context describing neighboring genes Neighboring gene predicted gene, 41970 Neighboring gene tRNA splicing endonuclease subunit 15 Neighboring gene basic transcription factor 3 pseudogene Neighboring gene ral guanine nucleotide dissociation stimulator,-like 1 Neighboring gene predicted gene, 46163 Neighboring gene ornithine decarboxylase, structural 1 pseudogene

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (2) 

    Pathways from BioSystems

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    procollagen galactosyltransferase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    transferase activity IEA
    Inferred from Electronic Annotation
    more info
     
    transferase activity, transferring glycosyl groups IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    cellular_component ND
    No biological Data available
    more info
     
    endoplasmic reticulum IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    procollagen galactosyltransferase 2
    Names
    glycosyltransferase 25 domain containing 2
    glycosyltransferase 25 family member 2
    hydroxylysine galactosyltransferase 2
    NP_808424.3

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_177756.4NP_808424.3  procollagen galactosyltransferase 2 precursor

      See identical proteins and their annotated locations for NP_808424.3

      Status: VALIDATED

      Source sequence(s)
      AK052838, BC068118
      Consensus CDS
      CCDS15364.1
      UniProtKB/Swiss-Prot
      Q6NVG7
      Related
      ENSMUSP00000037532.8, OTTMUSP00000029112, ENSMUST00000044311.8, OTTMUST00000059795
      Conserved Domains (2) summary
      pfam13704
      Location:61174
      Glyco_tranf_2_4; Glycosyl transferase family 2
      cl01298
      Location:340525
      Glyco_transf_25; Glycosyltransferase family 25 [lipooligosaccharide (LOS) biosynthesis protein] is a family of glycosyltransferases involved in LOS biosynthesis. The members include the beta(1,4) galactosyltransferases: Lgt2 of Moraxella catarrhalis, LgtB and LgtE of ...

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000067.6 Reference GRCm38.p4 C57BL/6J

      Range
      152399805..152510695
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_001784706.1 RNA Sequence

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