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    Ss18l2 SS18, nBAF chromatin remodeling complex subunit like 2 [ Mus musculus (house mouse) ]

    Gene ID: 26901, updated on 31-Jan-2019

    Summary

    Official Symbol
    Ss18l2provided by MGI
    Official Full Name
    SS18, nBAF chromatin remodeling complex subunit like 2provided by MGI
    Primary source
    MGI:MGI:1349474
    See related
    Ensembl:ENSMUSG00000032526
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Deb1; AI463209; 1110020I04Rik
    Expression
    Ubiquitous expression in heart adult (RPKM 32.5), cerebellum adult (RPKM 25.5) and 28 other tissues See more
    Orthologs

    Genomic context

    See Ss18l2 in Genome Data Viewer
    Location:
    9; 9 F4
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 9 NC_000075.6 (121710389..121712921)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 9 NC_000075.5 (121619507..121622039)

    Chromosome 9 - NC_000075.6Genomic Context describing neighboring genes Neighboring gene vasoactive intestinal peptide receptor 1 Neighboring gene SEC22 homolog C, vesicle trafficking protein Neighboring gene natural killer tumor recognition sequence Neighboring gene RIKEN cDNA E530011L22 gene Neighboring gene zinc finger protein 651

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    molecular_function ND
    No biological Data available
    more info
     
    transcription coactivator activity IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    positive regulation of dendrite morphogenesis IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    positive regulation of transcription by RNA polymerase II IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    positive regulation of transcription, DNA-templated IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Component Evidence Code Pubs
    nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 

    General protein information

    Preferred Names
    SS18-like protein 2
    Names
    Band 47B
    differentially expressed in B16F10 1

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_026794.2NP_081070.1  SS18-like protein 2

      See identical proteins and their annotated locations for NP_081070.1

      Status: PROVISIONAL

      Source sequence(s)
      BC027548
      Consensus CDS
      CCDS40811.1
      UniProtKB/Swiss-Prot
      Q9D174
      Related
      ENSMUSP00000035113.8, ENSMUST00000035113.10
      Conserved Domains (1) summary
      pfam05030
      Location:1471
      SSXT; SSXT protein (N-terminal region)

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000075.6 Reference GRCm38.p4 C57BL/6J

      Range
      121710389..121712921
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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