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    Cops4 COP9 signalosome subunit 4 [ Mus musculus (house mouse) ]

    Gene ID: 26891, updated on 31-Jan-2019

    Summary

    Official Symbol
    Cops4provided by MGI
    Official Full Name
    COP9 signalosome subunit 4provided by MGI
    Primary source
    MGI:MGI:1349414
    See related
    Ensembl:ENSMUSG00000035297
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    SGN4; AW208976; D5Ertd774e
    Expression
    Ubiquitous expression in testis adult (RPKM 42.5), placenta adult (RPKM 24.8) and 28 other tissues See more
    Orthologs

    Genomic context

    See Cops4 in Genome Data Viewer
    Location:
    5 E4; 5 48.49 cM
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 5 NC_000071.6 (100518309..100547802)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 5 NC_000071.5 (100947328..100976821)

    Chromosome 5 - NC_000071.6Genomic Context describing neighboring genes Neighboring gene lin-54 homolog (C. elegans) Neighboring gene predicted gene, 19620 Neighboring gene placenta-specific 8 Neighboring gene coenzyme Q2 4-hydroxybenzoate polyprenyltransferase

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (1) 

    Pathways from BioSystems

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Clone Names

    • MGC151177, MGC151203

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    contributes_to NEDD8-specific protease activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    Process Evidence Code Pubs
    protein deneddylation ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    COP9 signalosome IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    COP9 signalosome IDA
    Inferred from Direct Assay
    more info
    PubMed 
    COP9 signalosome ISO
    Inferred from Sequence Orthology
    more info
     
    cell junction ISO
    Inferred from Sequence Orthology
    more info
     
    cytoplasm IEA
    Inferred from Electronic Annotation
    more info
     
    cytoplasmic vesicle IEA
    Inferred from Electronic Annotation
    more info
     
    cytosol IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    nuclear speck ISO
    Inferred from Sequence Orthology
    more info
     
    nucleus IEA
    Inferred from Electronic Annotation
    more info
     
    synapse IEA
    Inferred from Electronic Annotation
    more info
     
    synaptic vesicle ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    COP9 signalosome complex subunit 4
    Names
    COP9 (constitutive photomorphogenic) homolog, subunit 4
    COP9 (constitutive photomorphogenic), subunit 4
    COP9 complex S4
    JAB1-containing signalosome subunit 4
    signalosome subunit 4

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001359203.1NP_001346132.1  COP9 signalosome complex subunit 4 isoform b

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) differs in the 5' UTR and coding sequence compared to variant 1. The resulting isoform (b) is shorter at the N-terminus compared to isoform a.
      Source sequence(s)
      AC109196
      Conserved Domains (2) summary
      COG5071
      Location:20326
      RPN5; 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
      pfam01399
      Location:213311
      PCI; PCI domain
    2. NM_001359204.1NP_001346133.1  COP9 signalosome complex subunit 4 isoform b

      Status: VALIDATED

      Description
      Transcript Variant: This variant (3) differs in the 5' UTR and coding sequence compared to variant 1. The resulting isoform (b) is shorter at the N-terminus compared to isoform a.
      Source sequence(s)
      AC109196
      Conserved Domains (2) summary
      COG5071
      Location:20326
      RPN5; 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
      pfam01399
      Location:213311
      PCI; PCI domain
    3. NM_012001.2NP_036131.1  COP9 signalosome complex subunit 4 isoform a

      See identical proteins and their annotated locations for NP_036131.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longest transcript and encodes the longer isoform (a).
      Source sequence(s)
      BC116800, CD774670, CX203220
      Consensus CDS
      CCDS19463.1
      UniProtKB/Swiss-Prot
      O88544
      UniProtKB/TrEMBL
      Q14AI7
      Related
      ENSMUSP00000048416.8, ENSMUST00000045993.14
      Conserved Domains (2) summary
      COG5071
      Location:71377
      RPN5; 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
      pfam01399
      Location:264362
      PCI; PCI domain

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000071.6 Reference GRCm38.p4 C57BL/6J

      Range
      100518309..100547802
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006534955.1XP_006535018.1  COP9 signalosome complex subunit 4 isoform X3

      Conserved Domains (1) summary
      COG5071
      Location:71337
      RPN5; 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
    2. XM_006534954.3XP_006535017.1  COP9 signalosome complex subunit 4 isoform X2

      Conserved Domains (2) summary
      COG5071
      Location:20326
      RPN5; 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
      pfam01399
      Location:213311
      PCI; PCI domain
    3. XM_006534953.2XP_006535016.1  COP9 signalosome complex subunit 4 isoform X1

      See identical proteins and their annotated locations for XP_006535016.1

      Conserved Domains (2) summary
      COG5071
      Location:20326
      RPN5; 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
      pfam01399
      Location:213311
      PCI; PCI domain
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