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    Lsm12 LSM12 homolog [ Mus musculus (house mouse) ]

    Gene ID: 268490, updated on 26-Sep-2022

    Summary

    Official Symbol
    Lsm12provided by MGI
    Official Full Name
    LSM12 homologprovided by MGI
    Primary source
    MGI:MGI:1919592
    See related
    Ensembl:ENSMUSG00000020922 AllianceGenome:MGI:1919592
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    1110059P07; 1110032E16Rik; 2600001B17Rik
    Summary
    Orthologous to human LSM12 (LSM12 homolog). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Ubiquitous expression in subcutaneous fat pad adult (RPKM 18.6), CNS E11.5 (RPKM 16.7) and 28 other tissues See more
    Orthologs
    NEW
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    Try the new Transcript table

    Genomic context

    See Lsm12 in Genome Data Viewer
    Location:
    11; 11 D
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 11 NC_000077.7 (102053323..102077089, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 11 NC_000077.6 (102162497..102186268, complement)

    Chromosome 11 - NC_000077.7Genomic Context describing neighboring genes Neighboring gene predicted gene 11586 Neighboring gene N-acetylglutamate synthase Neighboring gene transmembrane protein 101 Neighboring gene glucose 6 phosphatase, catalytic, 3 Neighboring gene histone deacetylase 5 Neighboring gene microRNA 8101

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
     
    located_in cytoplasm ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    protein LSM12; protein LSM12 homolog

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_172947.3NP_766535.1  protein LSM12

      See identical proteins and their annotated locations for NP_766535.1

      Status: PROVISIONAL

      Source sequence(s)
      AL954730, BX323852
      Consensus CDS
      CCDS25490.1
      UniProtKB/Swiss-Prot
      A2AWS3, Q9D0R8
      UniProtKB/TrEMBL
      A0A8C6I923
      Related
      ENSMUSP00000021297.6, ENSMUST00000021297.6
      Conserved Domains (2) summary
      cd01735
      Location:767
      LSm12_N; Like-Sm protein 12, N-terminal domain
      smart00995
      Location:78165
      AD; Anticodon-binding domain

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000077.7 Reference GRCm39 C57BL/6J

      Range
      102053323..102077089 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006533414.5XP_006533477.1  protein LSM12 homolog isoform X1

      See identical proteins and their annotated locations for XP_006533477.1

      UniProtKB/Swiss-Prot
      A2AWS3, Q9D0R8
      UniProtKB/TrEMBL
      A0A8C6I923
      Conserved Domains (2) summary
      cd01735
      Location:767
      LSm12_N; Like-Sm protein 12, N-terminal domain
      smart00995
      Location:78165
      AD; Anticodon-binding domain