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    Lsm12 LSM12 homolog [ Mus musculus (house mouse) ]

    Gene ID: 268490, updated on 9-Sep-2018

    Summary

    Official Symbol
    Lsm12provided by MGI
    Official Full Name
    LSM12 homologprovided by MGI
    Primary source
    MGI:MGI:1919592
    See related
    Ensembl:ENSMUSG00000020922 Vega:OTTMUSG00000002494
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    1110059P07; 1110032E16Rik; 2600001B17Rik
    Expression
    Ubiquitous expression in subcutaneous fat pad adult (RPKM 18.6), CNS E11.5 (RPKM 16.7) and 28 other tissues See more
    Orthologs

    Genomic context

    See Lsm12 in Genome Data Viewer
    Location:
    11; 11 D
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 11 NC_000077.6 (102162497..102186269, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 11 NC_000077.5 (102024803..102046570, complement)

    Chromosome 11 - NC_000077.6Genomic Context describing neighboring genes Neighboring gene predicted gene 11586 Neighboring gene N-acetylglutamate synthase Neighboring gene transmembrane protein 101 Neighboring gene glucose 6 phosphatase, catalytic, 3 Neighboring gene histone deacetylase 5 Neighboring gene microRNA 8101

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    RNA metabolic process IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Component Evidence Code Pubs
    cellular_component ND
    No biological Data available
    more info
     

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_172947.3NP_766535.1  protein LSM12 homolog

      See identical proteins and their annotated locations for NP_766535.1

      Status: PROVISIONAL

      Source sequence(s)
      AL954730, BX323852
      Consensus CDS
      CCDS25490.1
      UniProtKB/Swiss-Prot
      Q9D0R8
      Related
      ENSMUSP00000021297.5, OTTMUSP00000002345, ENSMUST00000021297.5, OTTMUST00000004879
      Conserved Domains (2) summary
      cd01735
      Location:767
      LSm12_N; Like-Sm protein 12, N-terminal domain
      smart00995
      Location:78165
      AD; Anticodon-binding domain

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000077.6 Reference GRCm38.p4 C57BL/6J

      Range
      102162497..102186269 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006533414.3XP_006533477.1  protein LSM12 homolog isoform X1

      See identical proteins and their annotated locations for XP_006533477.1

      UniProtKB/Swiss-Prot
      Q9D0R8
      Conserved Domains (2) summary
      cd01735
      Location:767
      LSm12_N; Like-Sm protein 12, N-terminal domain
      smart00995
      Location:78165
      AD; Anticodon-binding domain
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