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    Rpl23a ribosomal protein L23A [ Mus musculus (house mouse) ]

    Gene ID: 268449, updated on 16-Oct-2021

    Summary

    Official Symbol
    Rpl23aprovided by MGI
    Official Full Name
    ribosomal protein L23Aprovided by MGI
    Primary source
    MGI:MGI:3040672
    See related
    Ensembl:ENSMUSG00000058546
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    MDA20; BC029892
    Expression
    Broad expression in CNS E11.5 (RPKM 878.5), liver E14 (RPKM 813.0) and 23 other tissues See more
    Orthologs
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    Genomic context

    See Rpl23a in Genome Data Viewer
    Location:
    11; 11 B5
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 11 NC_000077.7 (78071761..78074410, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 11 NC_000077.6 (78180935..78183584, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 11 NC_000077.5 (77994437..77997086, complement)

    Chromosome 11 - NC_000077.7Genomic Context describing neighboring genes Neighboring gene NIMA (never in mitosis gene a)-related expressed kinase 8 Neighboring gene microRNA 7653 Neighboring gene TLC domain containing 1 Neighboring gene small nucleolar RNA, C/D box 42A Neighboring gene small nucleolar RNA, C/D box 4A Neighboring gene small nucleolar RNA, C/D box 42B Neighboring gene Rab34 Hedgehog-responsive enhancer Neighboring gene RAB34, member RAS oncogene family Neighboring gene protein interacting with cyclin A1

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Pathways from PubChem

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Clone Names

    • MGC36820, MGC107550, MGC107551

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables TORC2 complex binding IDA
    Inferred from Direct Assay
    more info
    PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    enables rRNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables structural constituent of ribosome IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    enables structural constituent of ribosome ISO
    Inferred from Sequence Orthology
    more info
     
    Process Evidence Code Pubs
    involved_in ribosomal large subunit assembly IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    involved_in translation IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    located_in cytosol TAS
    Traceable Author Statement
    more info
     
    part_of cytosolic large ribosomal subunit IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    located_in cytosolic ribosome ISO
    Inferred from Sequence Orthology
    more info
     
    located_in nucleus ISO
    Inferred from Sequence Orthology
    more info
     
    located_in ribosome IEA
    Inferred from Electronic Annotation
    more info
     

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_207523.2NP_997406.1  60S ribosomal protein L23a

      See identical proteins and their annotated locations for NP_997406.1

      Status: VALIDATED

      Source sequence(s)
      BC125642, BY271596, BY585987
      Consensus CDS
      CCDS25093.1
      UniProtKB/Swiss-Prot
      P62751
      UniProtKB/TrEMBL
      Q5M9M5
      Related
      ENSMUSP00000099541.5, ENSMUST00000102483.5
      Conserved Domains (1) summary
      PTZ00191
      Location:36156
      PTZ00191; 60S ribosomal protein L23a; Provisional

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000077.7 Reference GRCm39 C57BL/6J

      Range
      78071761..78074410 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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