Format

Send to:

Choose Destination
    • Showing Current items.

    Abca13 ATP-binding cassette, sub-family A (ABC1), member 13 [ Mus musculus (house mouse) ]

    Gene ID: 268379, updated on 31-Jan-2019

    Summary

    Official Symbol
    Abca13provided by MGI
    Official Full Name
    ATP-binding cassette, sub-family A (ABC1), member 13provided by MGI
    Primary source
    MGI:MGI:2388707
    See related
    Ensembl:ENSMUSG00000004668
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    AI956815; 9830132L24; A930002G16Rik
    Expression
    Biased expression in kidney adult (RPKM 3.8) and liver E18 (RPKM 0.4) See more
    Orthologs

    Genomic context

    See Abca13 in Genome Data Viewer
    Location:
    11; 11 A1
    Exon count:
    62
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 11 NC_000077.6 (9191942..9684853)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 11 NC_000077.5 (9091945..9584262)

    Chromosome 11 - NC_000077.6Genomic Context describing neighboring genes Neighboring gene polymerase (RNA) II (DNA directed) polypeptide C pseudogene Neighboring gene uridine phosphorylase 1 Neighboring gene eukaryotic translation initiation factor 3, subunit 6, pseudogene 1 Neighboring gene glyceraldehyde-3-phosphate dehydrogenase pseudogene

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (3) 

    Pathways from BioSystems

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    ATP binding IEA
    Inferred from Electronic Annotation
    more info
     
    ATPase activity IEA
    Inferred from Electronic Annotation
    more info
     
    ATPase activity, coupled to transmembrane movement of substances IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    lipid transporter activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    nucleotide binding IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    lipid transport IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    integral component of membrane IEA
    Inferred from Electronic Annotation
    more info
     
    intracellular membrane-bounded organelle IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    membrane IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    ATP-binding cassette sub-family A member 13
    Names
    ATP-binding cassette transporter

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_178259.3NP_839990.2  ATP-binding cassette sub-family A member 13

      See identical proteins and their annotated locations for NP_839990.2

      Status: VALIDATED

      Source sequence(s)
      AL645994, AL663110, AL663114, AL669853
      Consensus CDS
      CCDS36110.1
      UniProtKB/Swiss-Prot
      Q5SSE9
      Related
      ENSMUSP00000040465.6, ENSMUST00000042740.12
      Conserved Domains (2) summary
      TIGR01257
      Location:30365019
      rim_protein; retinal-specific rim ABC transporter
      cd03263
      Location:46924919
      ABC_subfamily_A; ATP-binding cassette domain of the lipid transporters, subfamily A

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000077.6 Reference GRCm38.p4 C57BL/6J

      Range
      9191942..9684853
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006514706.3XP_006514769.2  ATP-binding cassette sub-family A member 13 isoform X1

      Conserved Domains (2) summary
      TIGR01257
      Location:22054150
      rim_protein; retinal-specific rim ABC transporter
      cd03263
      Location:38234050
      ABC_subfamily_A; ATP-binding cassette domain of the lipid transporters, subfamily A
    Support Center