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    Nubp2 nucleotide binding protein 2 [ Mus musculus (house mouse) ]

    Gene ID: 26426, updated on 23-Jun-2021

    Summary

    Official Symbol
    Nubp2provided by MGI
    Official Full Name
    nucleotide binding protein 2provided by MGI
    Primary source
    MGI:MGI:1347072
    See related
    Ensembl:ENSMUSG00000039183
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    D17Wsu11; D17Wsu11e
    Expression
    Ubiquitous expression in testis adult (RPKM 44.5), thymus adult (RPKM 22.0) and 28 other tissues See more
    Orthologs
    NEW
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    Genomic context

    See Nubp2 in Genome Data Viewer
    Location:
    17 A3.3; 17 12.53 cM
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 17 NC_000083.7 (25101585..25105423, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 17 NC_000083.6 (24882611..24886350, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 17 NC_000083.5 (25019556..25023295, complement)

    Chromosome 17 - NC_000083.7Genomic Context describing neighboring genes Neighboring gene hydroxyacyl glutathione hydrolase Neighboring gene fumarylacetoacetate hydrolase domain containing 1 Neighboring gene predicted gene, 41549 Neighboring gene insulin-like growth factor binding protein, acid labile subunit Neighboring gene splA/ryanodine receptor domain and SOCS box containing 3 Neighboring gene essential meiotic structure-specific endonuclease subunit 2 Neighboring gene mitochondrial ribosomal protein S34

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables 4 iron, 4 sulfur cluster binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
     
    enables iron-sulfur cluster binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables nucleotide binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within cell projection organization IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in iron-sulfur cluster assembly IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Component Evidence Code Pubs
    located_in cell projection IEA
    Inferred from Electronic Annotation
    more info
     
    located_in cilium IEA
    Inferred from Electronic Annotation
    more info
     
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
     
    located_in cytoskeleton IEA
    Inferred from Electronic Annotation
    more info
     
    is_active_in cytosol IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in spindle pole centrosome IDA
    Inferred from Direct Assay
    more info
    PubMed 

    General protein information

    Preferred Names
    cytosolic Fe-S cluster assembly factor NUBP2

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001355396.1NP_001342325.1  cytosolic Fe-S cluster assembly factor NUBP2 isoform 2

      Status: VALIDATED

      Source sequence(s)
      AC166102
      Consensus CDS
      CCDS89014.1
      Conserved Domains (1) summary
      pfam10609
      Location:1203
      ParA; NUBPL iron-transfer P-loop NTPase
    2. NM_001379052.1NP_001365981.1  cytosolic Fe-S cluster assembly factor NUBP2 isoform 2

      Status: VALIDATED

      Source sequence(s)
      AC166102
      Conserved Domains (1) summary
      pfam10609
      Location:12263
      ParA; NUBPL iron-transfer P-loop NTPase
    3. NM_001379053.1NP_001365982.1  cytosolic Fe-S cluster assembly factor NUBP2 isoform 2

      Status: VALIDATED

      Source sequence(s)
      AC166102
      Conserved Domains (1) summary
      pfam10609
      Location:1203
      ParA; NUBPL iron-transfer P-loop NTPase
    4. NM_001379054.1NP_001365983.1  cytosolic Fe-S cluster assembly factor NUBP2 isoform 2

      Status: VALIDATED

      Source sequence(s)
      AC166102
      Conserved Domains (1) summary
      pfam10609
      Location:1203
      ParA; NUBPL iron-transfer P-loop NTPase
    5. NM_001379055.1NP_001365984.1  cytosolic Fe-S cluster assembly factor NUBP2 isoform 2

      Status: VALIDATED

      Source sequence(s)
      AC166102
      Conserved Domains (1) summary
      pfam10609
      Location:1203
      ParA; NUBPL iron-transfer P-loop NTPase
    6. NM_001379056.1NP_001365985.1  cytosolic Fe-S cluster assembly factor NUBP2 isoform 2

      Status: VALIDATED

      Source sequence(s)
      AC166102
      Related
      ENSMUSP00000157378.2, ENSMUST00000234928.2
      Conserved Domains (1) summary
      pfam10609
      Location:1203
      ParA; NUBPL iron-transfer P-loop NTPase
    7. NM_011956.3NP_036086.1  cytosolic Fe-S cluster assembly factor NUBP2 isoform 1

      See identical proteins and their annotated locations for NP_036086.1

      Status: VALIDATED

      Source sequence(s)
      AF114169, BI735707, BU700400
      Consensus CDS
      CCDS28500.1
      UniProtKB/Swiss-Prot
      Q9R061
      Related
      ENSMUSP00000049319.6, ENSMUST00000044252.7
      Conserved Domains (1) summary
      pfam10609
      Location:17266
      ParA; NUBPL iron-transfer P-loop NTPase

    RNA

    1. NR_166441.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC166102
      Related
      ENSMUST00000234293.2
    2. NR_166442.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC166102
      Related
      ENSMUST00000234261.2
    3. NR_166443.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC166102
      Related
      ENSMUST00000234352.2

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000083.7 Reference GRCm39 C57BL/6J

      Range
      25101585..25105423 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_036160624.1XP_036016517.1  cytosolic Fe-S cluster assembly factor NUBP2 isoform X1

      Related
      ENSMUSP00000157175.2, ENSMUST00000234968.2
      Conserved Domains (1) summary
      pfam10609
      Location:44256
      ParA; NUBPL iron-transfer P-loop NTPase
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