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    Klhl8 kelch-like 8 [ Mus musculus (house mouse) ]

    Gene ID: 246293, updated on 18-Sep-2024

    Summary

    Official Symbol
    Klhl8provided by MGI
    Official Full Name
    kelch-like 8provided by MGI
    Primary source
    MGI:MGI:2179430
    See related
    Ensembl:ENSMUSG00000029312 AllianceGenome:MGI:2179430
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    D5Ertd431e; 2310001P09Rik
    Summary
    Predicted to be involved in protein ubiquitination and ubiquitin-dependent protein catabolic process. Predicted to be located in nucleoplasm. Predicted to be part of Cul3-RING ubiquitin ligase complex. Is expressed in several structures, including adrenal gland; brain; future hindbrain; genitourinary system; and gut. Orthologous to human KLHL8 (kelch like family member 8). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Broad expression in CNS E18 (RPKM 14.2), whole brain E14.5 (RPKM 10.2) and 23 other tissues See more
    Orthologs
    NEW
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    Genomic context

    See Klhl8 in Genome Data Viewer
    Location:
    5 E5; 5 50.45 cM
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 5 NC_000071.7 (104009916..104059137, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 5 NC_000071.6 (103862050..103911259, complement)

    Chromosome 5 - NC_000071.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer ABC_E3590 Neighboring gene predicted gene, 42138 Neighboring gene predicted gene, 25721 Neighboring gene STARR-positive B cell enhancer mm9_chr5:104121192-104121493 Neighboring gene STARR-positive B cell enhancer ABC_E3591 Neighboring gene STARR-seq mESC enhancer starr_13785 Neighboring gene STARR-seq mESC enhancer starr_13786 Neighboring gene STARR-positive B cell enhancer ABC_E10335 Neighboring gene STARR-positive B cell enhancer ABC_E8066 Neighboring gene STARR-seq mESC enhancer starr_13791 Neighboring gene CapStarr-seq enhancer MGSCv37_chr5:104155653-104155892 Neighboring gene STARR-seq mESC enhancer starr_13794 Neighboring gene AF4/FMR2 family, member 1 Neighboring gene STARR-positive B cell enhancer ABC_E2755 Neighboring gene STARR-positive B cell enhancer ABC_E9258 Neighboring gene CapStarr-seq enhancer MGSCv37_chr5:104185304-104185591 Neighboring gene CapStarr-seq enhancer MGSCv37_chr5:104189527-104189796 Neighboring gene STARR-seq mESC enhancer starr_13808 Neighboring gene predicted gene, 42139 Neighboring gene predicted gene, 24897 Neighboring gene STARR-positive B cell enhancer mm9_chr5:104356466-104356766 Neighboring gene STARR-seq mESC enhancer starr_13815 Neighboring gene hydroxysteroid (17-beta) dehydrogenase 13 Neighboring gene CapStarr-seq enhancer MGSCv37_chr5:104436899-104437123 Neighboring gene hydroxysteroid (17-beta) dehydrogenase 11 Neighboring gene STARR-seq mESC enhancer starr_13817

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (2) 
    • Gene trapped (1) 
    • Targeted (2) 

    General gene information

    Markers

    Clone Names

    • MGC102224

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables ubiquitin-like ligase-substrate adaptor activity IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    Process Evidence Code Pubs
    involved_in proteasome-mediated ubiquitin-dependent protein catabolic process IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in protein ubiquitination IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in protein ubiquitination ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in protein ubiquitination ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    involved_in ubiquitin-dependent protein catabolic process ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in ubiquitin-dependent protein catabolic process ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    Component Evidence Code Pubs
    part_of Cul3-RING ubiquitin ligase complex IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    part_of Cul3-RING ubiquitin ligase complex ISO
    Inferred from Sequence Orthology
    more info
     
    part_of Cul3-RING ubiquitin ligase complex ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    is_active_in cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in nucleoplasm IEA
    Inferred from Electronic Annotation
    more info
     
    located_in nucleoplasm ISO
    Inferred from Sequence Orthology
    more info
     

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001359986.1NP_001346915.1  kelch-like protein 8

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longest transcript. All three variants encode the same protein.
      Source sequence(s)
      AL731554
      Consensus CDS
      CCDS19479.1
      UniProtKB/Swiss-Prot
      P59280, Q8CD84
      Conserved Domains (4) summary
      smart00612
      Location:564609
      Kelch; Kelch domain
      PHA03098
      Location:69544
      PHA03098; kelch-like protein; Provisional
      sd00038
      Location:365408
      Kelch; KELCH repeat [structural motif]
      cd18238
      Location:61180
      BTB_POZ_KLHL8; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in Kelch-like protein 8 (KLHL8)
    2. NM_001359987.1NP_001346916.1  kelch-like protein 8

      Status: VALIDATED

      Description
      Transcript Variant: This variant (3) differs in the 5' UTR compared to variant 1. All three variants encode the same protein.
      Source sequence(s)
      AL731554
      Consensus CDS
      CCDS19479.1
      UniProtKB/Swiss-Prot
      P59280, Q8CD84
      Conserved Domains (4) summary
      smart00612
      Location:564609
      Kelch; Kelch domain
      PHA03098
      Location:69544
      PHA03098; kelch-like protein; Provisional
      sd00038
      Location:365408
      Kelch; KELCH repeat [structural motif]
      cd18238
      Location:61180
      BTB_POZ_KLHL8; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in Kelch-like protein 8 (KLHL8)
    3. NM_178741.4NP_848856.1  kelch-like protein 8

      See identical proteins and their annotated locations for NP_848856.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) differs in the 5' UTR compared to variant 1. All three variants encode the same protein.
      Source sequence(s)
      AK031028, BY250847
      Consensus CDS
      CCDS19479.1
      UniProtKB/Swiss-Prot
      P59280, Q8CD84
      Related
      ENSMUSP00000031254.3, ENSMUST00000031254.9
      Conserved Domains (4) summary
      smart00612
      Location:564609
      Kelch; Kelch domain
      PHA03098
      Location:69544
      PHA03098; kelch-like protein; Provisional
      sd00038
      Location:365408
      Kelch; KELCH repeat [structural motif]
      cd18238
      Location:61180
      BTB_POZ_KLHL8; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in Kelch-like protein 8 (KLHL8)

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000071.7 Reference GRCm39 C57BL/6J

      Range
      104009916..104059137 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_030254509.2XP_030110369.1  kelch-like protein 8 isoform X1

      UniProtKB/Swiss-Prot
      P59280, Q8CD84
      Conserved Domains (4) summary
      smart00612
      Location:564609
      Kelch; Kelch domain
      PHA03098
      Location:69544
      PHA03098; kelch-like protein; Provisional
      sd00038
      Location:365408
      Kelch; KELCH repeat [structural motif]
      cd18238
      Location:61180
      BTB_POZ_KLHL8; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in Kelch-like protein 8 (KLHL8)
    2. XM_030254508.2XP_030110368.1  kelch-like protein 8 isoform X1

      UniProtKB/Swiss-Prot
      P59280, Q8CD84
      Conserved Domains (4) summary
      smart00612
      Location:564609
      Kelch; Kelch domain
      PHA03098
      Location:69544
      PHA03098; kelch-like protein; Provisional
      sd00038
      Location:365408
      Kelch; KELCH repeat [structural motif]
      cd18238
      Location:61180
      BTB_POZ_KLHL8; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in Kelch-like protein 8 (KLHL8)
    3. XM_030254510.2XP_030110370.1  kelch-like protein 8 isoform X1

      UniProtKB/Swiss-Prot
      P59280, Q8CD84
      Conserved Domains (4) summary
      smart00612
      Location:564609
      Kelch; Kelch domain
      PHA03098
      Location:69544
      PHA03098; kelch-like protein; Provisional
      sd00038
      Location:365408
      Kelch; KELCH repeat [structural motif]
      cd18238
      Location:61180
      BTB_POZ_KLHL8; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in Kelch-like protein 8 (KLHL8)
    4. XM_036165139.1XP_036021032.1  kelch-like protein 8 isoform X1

      UniProtKB/Swiss-Prot
      P59280, Q8CD84
      Conserved Domains (4) summary
      smart00612
      Location:564609
      Kelch; Kelch domain
      PHA03098
      Location:69544
      PHA03098; kelch-like protein; Provisional
      sd00038
      Location:365408
      Kelch; KELCH repeat [structural motif]
      cd18238
      Location:61180
      BTB_POZ_KLHL8; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in Kelch-like protein 8 (KLHL8)
    5. XM_036165138.1XP_036021031.1  kelch-like protein 8 isoform X1

      UniProtKB/Swiss-Prot
      P59280, Q8CD84
      Conserved Domains (4) summary
      smart00612
      Location:564609
      Kelch; Kelch domain
      PHA03098
      Location:69544
      PHA03098; kelch-like protein; Provisional
      sd00038
      Location:365408
      Kelch; KELCH repeat [structural motif]
      cd18238
      Location:61180
      BTB_POZ_KLHL8; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in Kelch-like protein 8 (KLHL8)
    6. XM_036165137.1XP_036021030.1  kelch-like protein 8 isoform X1

      UniProtKB/Swiss-Prot
      P59280, Q8CD84
      Conserved Domains (4) summary
      smart00612
      Location:564609
      Kelch; Kelch domain
      PHA03098
      Location:69544
      PHA03098; kelch-like protein; Provisional
      sd00038
      Location:365408
      Kelch; KELCH repeat [structural motif]
      cd18238
      Location:61180
      BTB_POZ_KLHL8; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in Kelch-like protein 8 (KLHL8)