Format

Send to:

Choose Destination
    • Showing Current items.

    AU018091 expressed sequence AU018091 [ Mus musculus (house mouse) ]

    Gene ID: 245128, updated on 31-Jan-2019

    Summary

    Official Symbol
    AU018091provided by MGI
    Official Full Name
    expressed sequence AU018091provided by MGI
    Primary source
    MGI:MGI:2142124
    See related
    Ensembl:ENSMUSG00000054753
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Expression
    Biased expression in placenta adult (RPKM 6.6) and testis adult (RPKM 1.5) See more

    Genomic context

    See AU018091 in Genome Data Viewer
    Location:
    7; 7 A1
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 7 NC_000073.6 (3154658..3169252, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 7 NC_000073.5 (3154659..3169204, complement)

    Chromosome 7 - NC_000073.6Genomic Context describing neighboring genes Neighboring gene spermatogenesis associated glutamate (E)-rich protein 9, pseudogene 1 Neighboring gene zinc finger pseudogene Neighboring gene proteasome subunit beta type 5 precursor (proteasome epsilon chain) (Macropain epsilon chain) (multicatalytic endopeptidase complex epsilon chain) (proteasome subunit X) (proteasome chain 6) Neighboring gene microRNA 290a Neighboring gene microRNA 290b

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Gene trapped (1) 

    General gene information

    Markers

    Homology

    Clone Names

    • MGC91100, MGC91107

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    L-lysine transmembrane transporter activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    L-ornithine transmembrane transporter activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    arginine transmembrane transporter activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Process Evidence Code Pubs
    L-arginine import across plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    L-ornithine transmembrane transport IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 

    General protein information

    Preferred Names
    cationic amino acid transporter 5

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001004153.2NP_001004153.2  cationic amino acid transporter 5

      Status: VALIDATED

      Source sequence(s)
      AB201954, BC080735
      Consensus CDS
      CCDS39724.2
      UniProtKB/TrEMBL
      E9PWS4, Q0PDJ1, Q66JW0
      Related
      ENSMUSP00000126800.1, ENSMUST00000171749.2
      Conserved Domains (2) summary
      TIGR00906
      Location:53656
      2A0303; cationic amino acid transport permease
      pfam13906
      Location:604654
      AA_permease_C; C-terminus of AA_permease

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000073.6 Reference GRCm38.p4 C57BL/6J

      Range
      3154658..3169252 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006539984.2XP_006540047.1  cationic amino acid transporter 5 isoform X1

      See identical proteins and their annotated locations for XP_006540047.1

      Conserved Domains (2) summary
      TIGR00906
      Location:52655
      2A0303; cationic amino acid transport permease
      pfam13906
      Location:603653
      AA_permease_C; C-terminus of AA_permease

    Reference GRCm38.p4 PATCHES

    Genomic

    1. NW_004058052.1 Reference GRCm38.p4 PATCHES

      Range
      154498..169029 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Support Center