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    Npat nuclear protein in the AT region [ Mus musculus (house mouse) ]

    Gene ID: 244879, updated on 31-Jan-2019

    Summary

    Official Symbol
    Npatprovided by MGI
    Official Full Name
    nuclear protein in the AT regionprovided by MGI
    Primary source
    MGI:MGI:107605
    See related
    Ensembl:ENSMUSG00000033054
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    AI427561; BB112559; 6820401K01
    Expression
    Ubiquitous expression in CNS E11.5 (RPKM 4.3), placenta adult (RPKM 4.3) and 26 other tissues See more
    Orthologs

    Genomic context

    See Npat in Genome Data Viewer
    Location:
    9 A5.3; 9 29.12 cM
    Exon count:
    20
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 9 NC_000075.6 (53537020..53575627)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 9 NC_000075.5 (53345152..53383732)

    Chromosome 9 - NC_000075.6Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA 4930550C14 gene Neighboring gene ataxia telangiectasia mutated Neighboring gene acetyl-Coenzyme A acetyltransferase 1 Neighboring gene cullin 5 Neighboring gene predicted gene 16124

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (2) 

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    protein C-terminus binding ISO
    Inferred from Sequence Orthology
    more info
     
    protein N-terminus binding ISO
    Inferred from Sequence Orthology
    more info
     
    transcription coactivator activity ISO
    Inferred from Sequence Orthology
    more info
     
    transcription corepressor activity ISO
    Inferred from Sequence Orthology
    more info
     
    Process Evidence Code Pubs
    cell cycle IEA
    Inferred from Electronic Annotation
    more info
     
    positive regulation of transcription, DNA-templated ISO
    Inferred from Sequence Orthology
    more info
     
    regulation of gene expression ISO
    Inferred from Sequence Orthology
    more info
     
    regulation of transcription involved in G1/S transition of mitotic cell cycle ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    Cajal body ISO
    Inferred from Sequence Orthology
    more info
     
    Gemini of coiled bodies ISO
    Inferred from Sequence Orthology
    more info
     
    cytoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    nucleoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    nucleus ISO
    Inferred from Sequence Orthology
    more info
     

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001081152.1NP_001074621.1  protein NPAT

      See identical proteins and their annotated locations for NP_001074621.1

      Status: PROVISIONAL

      Source sequence(s)
      AC156640
      Consensus CDS
      CCDS40637.1
      UniProtKB/Swiss-Prot
      Q8BMA5
      Related
      ENSMUSP00000048709.7, ENSMUST00000035850.7
      Conserved Domains (1) summary
      pfam15712
      Location:7551420
      NPAT_C; NPAT C terminus

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000075.6 Reference GRCm38.p4 C57BL/6J

      Range
      53537020..53575627
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006510336.3XP_006510399.1  protein NPAT isoform X1

      Conserved Domains (1) summary
      pfam15712
      Location:6981363
      NPAT_C; NPAT C terminus
    2. XM_011242531.2XP_011240833.1  protein NPAT isoform X2

      Conserved Domains (1) summary
      pfam15712
      Location:4481113
      NPAT_C; NPAT C terminus
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