Format

Send to:

Choose Destination
    • Showing Current items.

    Lsm14b LSM family member 14B [ Mus musculus (house mouse) ]

    Gene ID: 241846, updated on 3-Apr-2018

    Summary

    Official Symbol
    Lsm14bprovided by MGI
    Official Full Name
    LSM family member 14Bprovided by MGI
    Primary source
    MGI:MGI:3040677
    See related
    Ensembl:ENSMUSG00000039108 Vega:OTTMUSG00000016234
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    BC040823; 9430078B04
    Expression
    Ubiquitous expression in CNS E14 (RPKM 57.0), whole brain E14.5 (RPKM 50.6) and 28 other tissues See more
    Orthologs

    Genomic context

    See Lsm14b in Genome Data Viewer
    Location:
    2; 2 H4
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 2 NC_000068.7 (180024900..180035466)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 2 NC_000068.6 (179759692..179770166)

    Chromosome 2 - NC_000068.7Genomic Context describing neighboring genes Neighboring gene TATA-box binding protein associated factor 4 Neighboring gene RIKEN cDNA 4921531C22 gene Neighboring gene proteasome (prosome, macropain) subunit, alpha type 7 Neighboring gene SS18, nBAF chromatin remodeling complex subunit like 1

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (2) 

    General gene information

    Homology

    Gene Ontology Provided by MGI

    Process Evidence Code Pubs
    biological_process ND
    No biological Data available
    more info
     
    multicellular organism development IEA
    Inferred from Electronic Annotation
    more info
     
    regulation of translation IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    protein LSM14 homolog B
    Names
    LSM14 homolog B
    RNA-associated protein 55B
    mRAP55B

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_177727.4NP_808395.2  protein LSM14 homolog B

      See identical proteins and their annotated locations for NP_808395.2

      Status: VALIDATED

      Source sequence(s)
      AL663067, BC099395, BY720115, CF730033, DV654874
      Consensus CDS
      CCDS17165.2
      UniProtKB/Swiss-Prot
      Q8CGC4
      UniProtKB/TrEMBL
      Q4KL69
      Related
      ENSMUSP00000055036.5, OTTMUSP00000017385, ENSMUST00000055485.11, OTTMUST00000038901
      Conserved Domains (2) summary
      pfam09532
      Location:248349
      FDF; FDF domain
      pfam12701
      Location:882
      LSM14; Scd6-like Sm domain

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000068.7 Reference GRCm38.p4 C57BL/6J

      Range
      180024900..180035466
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006500619.3XP_006500682.1  protein LSM14 homolog B isoform X3

      Conserved Domains (2) summary
      pfam09532
      Location:299400
      FDF; FDF domain
      pfam12701
      Location:85159
      LSM14; Scd6-like Sm domain
    2. XM_006500618.3XP_006500681.1  protein LSM14 homolog B isoform X2

      Conserved Domains (2) summary
      pfam09532
      Location:338439
      FDF; FDF domain
      pfam12701
      Location:85159
      LSM14; Scd6-like Sm domain
    3. XM_006500617.3XP_006500680.1  protein LSM14 homolog B isoform X1

      Conserved Domains (2) summary
      pfam09532
      Location:364465
      FDF; FDF domain
      pfam12701
      Location:85159
      LSM14; Scd6-like Sm domain
    Support Center