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    Pin1rt1 peptidyl-prolyl cis/trans isomerase, NIMA-interacting 1, retrogene 1 [ Mus musculus (house mouse) ]

    Gene ID: 241593, updated on 27-Jul-2021

    Summary

    Official Symbol
    Pin1rt1provided by MGI
    Official Full Name
    peptidyl-prolyl cis/trans isomerase, NIMA-interacting 1, retrogene 1provided by MGI
    Primary source
    MGI:MGI:3649546
    See related
    Ensembl:ENSMUSG00000074997
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    P; Pin; Pin1l; Pin1-ps1
    Expression
    Broad expression in testis adult (RPKM 2.1), ovary adult (RPKM 0.7) and 18 other tissues See more
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    Genomic context

    See Pin1rt1 in Genome Data Viewer
    Location:
    2 E2; 2
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (104544232..104546707, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (104713887..104716362, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 2 NC_000068.6 (104554083..104556447, complement)

    Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene cleavage stimulation factor, 3' pre-RNA, subunit 3 Neighboring gene t-complex 11 like 1 Neighboring gene predicted gene 6306 Neighboring gene DEP domain containing 7 Neighboring gene glutamine and serine rich 1

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    General gene information

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables GTPase activating protein binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables beta-catenin binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables cis-trans isomerase activity ISO
    Inferred from Sequence Orthology
    more info
     
    enables mitogen-activated protein kinase kinase binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables peptidyl-prolyl cis-trans isomerase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    enables peptidyl-prolyl cis-trans isomerase activity IDA
    Inferred from Direct Assay
    more info
    PubMed 
    enables peptidyl-prolyl cis-trans isomerase activity ISO
    Inferred from Sequence Orthology
    more info
     
    enables phosphoserine residue binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables phosphothreonine residue binding ISO
    Inferred from Sequence Orthology
    more info
     
    Process Evidence Code Pubs
    involved_in negative regulation of ERK1 and ERK2 cascade ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in negative regulation of amyloid-beta formation ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in negative regulation of cell motility ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in negative regulation of neuron apoptotic process ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in negative regulation of protein binding ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in negative regulation of protein catabolic process ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in negative regulation of transforming growth factor beta receptor signaling pathway ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in positive regulation of GTPase activity ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in positive regulation of canonical Wnt signaling pathway ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in positive regulation of cell growth involved in cardiac muscle cell development ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in positive regulation of neuron apoptotic process ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in positive regulation of protein binding ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in positive regulation of protein dephosphorylation ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in positive regulation of protein phosphorylation ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in positive regulation of transcription by RNA polymerase II ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in positive regulation of ubiquitin-protein transferase activity ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in protein peptidyl-prolyl isomerization ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in protein stabilization ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in regulation of gene expression ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in regulation of pathway-restricted SMAD protein phosphorylation ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in regulation of protein localization to nucleus ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in regulation of protein phosphorylation ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in regulation of protein stability ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in response to hypoxia ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    located_in ciliary basal body ISO
    Inferred from Sequence Orthology
    more info
     
    located_in cytoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    is_active_in cytosol IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    located_in cytosol ISO
    Inferred from Sequence Orthology
    more info
     
    is_active_in glutamatergic synapse ISO
    Inferred from Sequence Orthology
    more info
     
    located_in mitochondrion ISO
    Inferred from Sequence Orthology
    more info
     
    located_in neuron projection ISO
    Inferred from Sequence Orthology
    more info
     
    located_in nucleoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    located_in nucleus ISO
    Inferred from Sequence Orthology
    more info
     
    is_active_in postsynaptic cytosol ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    peptidylprolyl cis/trans isomerase, NIMA-interacting 1
    Names
    peptidylprolyl cis/trans isomerase, NIMA-interacting 1, pseudogene 1
    protein (peptidyl-prolyl cis/trans isomerase) NIMA-interacting 1, retrogene 1
    NP_001028940.1
    XP_006499551.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001033768.2NP_001028940.1  peptidylprolyl cis/trans isomerase, NIMA-interacting 1

      See identical proteins and their annotated locations for NP_001028940.1

      Status: PROVISIONAL

      Source sequence(s)
      AK145372
      Consensus CDS
      CCDS71110.1
      UniProtKB/TrEMBL
      Q3ULQ2
      Related
      ENSMUSP00000139143.2, ENSMUST00000099659.3
      Conserved Domains (2) summary
      pfam00397
      Location:636
      WW; WW domain
      cl29122
      Location:47158
      Rotamase_2; PPIC-type PPIASE domain

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000068.8 Reference GRCm39 C57BL/6J

      Range
      104544232..104546707 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006499488.1XP_006499551.1  peptidylprolyl cis/trans isomerase, NIMA-interacting 1 isoform X1

      See identical proteins and their annotated locations for XP_006499551.1

      UniProtKB/TrEMBL
      Q3ULQ2
      Conserved Domains (2) summary
      pfam00397
      Location:636
      WW; WW domain
      cl29122
      Location:47158
      Rotamase_2; PPIC-type PPIASE domain
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