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    Taf10 TATA-box binding protein associated factor 10 [ Mus musculus (house mouse) ]

    Gene ID: 24075, updated on 3-Feb-2019

    Summary

    Official Symbol
    Taf10provided by MGI
    Official Full Name
    TATA-box binding protein associated factor 10provided by MGI
    Primary source
    MGI:MGI:1346320
    See related
    Ensembl:ENSMUSG00000043866
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    30kDa; Taf2h; TAFII30; AU041226
    Expression
    Ubiquitous expression in adrenal adult (RPKM 258.4), duodenum adult (RPKM 245.3) and 28 other tissues See more
    Orthologs

    Genomic context

    See Taf10 in Genome Data Viewer
    Location:
    7; 7 E3
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 7 NC_000073.6 (105742894..105744379, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 7 NC_000073.5 (112891408..112892852, complement)

    Chromosome 7 - NC_000073.6Genomic Context describing neighboring genes Neighboring gene dynein heavy chain domain 1 Neighboring gene mitochondrial ribosomal protein S36, pseudogene 2 Neighboring gene ribosomal RNA processing 8, methyltransferase, homolog (yeast) Neighboring gene integrin linked kinase Neighboring gene tripeptidyl peptidase I Neighboring gene uncharacterized LOC108167454 Neighboring gene dachsous cadherin related 1

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    Pathways from BioSystems

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    DNA binding IDA
    Inferred from Direct Assay
    more info
    PubMed 
    RNA polymerase II general transcription initiation factor activity ISO
    Inferred from Sequence Orthology
    more info
     
    contributes_to RNA polymerase II general transcription initiation factor activity ISO
    Inferred from Sequence Orthology
    more info
     
    RNA polymerase binding ISO
    Inferred from Sequence Orthology
    more info
     
    enzyme binding ISO
    Inferred from Sequence Orthology
    more info
     
    estrogen receptor binding ISO
    Inferred from Sequence Orthology
    more info
     
    contributes_to histone acetyltransferase activity ISO
    Inferred from Sequence Orthology
    more info
     
    Process Evidence Code Pubs
    DNA-templated transcription, initiation ISO
    Inferred from Sequence Orthology
    more info
     
    G1/S transition of mitotic cell cycle IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    apoptotic process IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    cellular protein-containing complex assembly IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    hepatocyte differentiation IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    histone H3 acetylation ISO
    Inferred from Sequence Orthology
    more info
     
    histone deubiquitination ISO
    Inferred from Sequence Orthology
    more info
     
    liver development IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    multicellular organism growth IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    protein homooligomerization ISO
    Inferred from Sequence Orthology
    more info
     
    regulation of DNA binding IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    regulation of gene expression IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    regulation of transcription, DNA-templated TAS
    Traceable Author Statement
    more info
    PubMed 
    transcription initiation from RNA polymerase II promoter ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    PCAF complex ISO
    Inferred from Sequence Orthology
    more info
     
    STAGA complex ISO
    Inferred from Sequence Orthology
    more info
     
    cytoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    nucleoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    nucleus IDA
    Inferred from Direct Assay
    more info
    PubMed 
    nucleus ISO
    Inferred from Sequence Orthology
    more info
     
    perinuclear region of cytoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    transcription factor TFIID complex ISO
    Inferred from Sequence Orthology
    more info
    PubMed 
    transcription factor TFIID complex TAS
    Traceable Author Statement
    more info
    PubMed 
    transcription factor TFTC complex ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    transcription initiation factor TFIID subunit 10
    Names
    TAF(II)30
    TAF10 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 30 kDa
    TAFII-30
    TATA box binding protein (TBP)-associated factor, RNA polymerase II, H, 30 kDa
    mTAFII30
    transcription initiation factor TFIID 30 kDa subunit

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_020024.3NP_064408.2  transcription initiation factor TFIID subunit 10

      See identical proteins and their annotated locations for NP_064408.2

      Status: PROVISIONAL

      Source sequence(s)
      BC031418
      Consensus CDS
      CCDS21660.1
      UniProtKB/Swiss-Prot
      Q8K0H5
      Related
      ENSMUSP00000118105.1, ENSMUST00000141116.1
      Conserved Domains (1) summary
      cd07982
      Location:115217
      TAF10; The TATA Binding Protein (TBP) Associated Factor 10

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000073.6 Reference GRCm38.p4 C57BL/6J

      Range
      105742894..105744379 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006507814.3XP_006507877.1  transcription initiation factor TFIID subunit 10 isoform X1

      Conserved Domains (1) summary
      cl02150
      Location:115152
      TAF10; The TATA Binding Protein (TBP) Associated Factor 10
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