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    Dmxl1 Dmx-like 1 [ Mus musculus (house mouse) ]

    Gene ID: 240283, updated on 31-Jan-2019

    Summary

    Official Symbol
    Dmxl1provided by MGI
    Official Full Name
    Dmx-like 1provided by MGI
    Primary source
    MGI:MGI:2443926
    See related
    Ensembl:ENSMUSG00000037416
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    D030030C22; C630007L23Rik
    Expression
    Ubiquitous expression in placenta adult (RPKM 4.7), cerebellum adult (RPKM 3.5) and 28 other tissues See more
    Orthologs

    Genomic context

    See Dmxl1 in Genome Data Viewer
    Location:
    18; 18 D1
    Exon count:
    45
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 18 NC_000084.6 (49832587..49965473)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 18 NC_000084.5 (49992667..50124739)

    Chromosome 18 - NC_000084.6Genomic Context describing neighboring genes Neighboring gene predicted gene 16283 Neighboring gene RIKEN cDNA 1700065O20 gene Neighboring gene tumor necrosis factor, alpha-induced protein 8 Neighboring gene predicted gene, 33335 Neighboring gene RIKEN cDNA C030005K06 gene

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    vacuolar acidification IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Component Evidence Code Pubs
    RAVE complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 

    General protein information

    Preferred Names
    dmX-like protein 1
    Names
    X-like 1 protein

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001081371.2NP_001074840.2  dmX-like protein 1

      See identical proteins and their annotated locations for NP_001074840.2

      Status: VALIDATED

      Source sequence(s)
      AC113451, AC166570
      Consensus CDS
      CCDS37816.2
      UniProtKB/Swiss-Prot
      Q6PNC0
      Related
      ENSMUSP00000137871.1, ENSMUST00000180611.7
      Conserved Domains (4) summary
      COG2319
      Location:27663008
      WD40; WD40 repeat [General function prediction only]
      pfam12234
      Location:11391875
      Rav1p_C; RAVE protein 1 C terminal
      sd00039
      Location:27772822
      7WD40; WD40 repeat [structural motif]
      cl02567
      Location:27332990
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000084.6 Reference GRCm38.p4 C57BL/6J

      Range
      49832587..49965473
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006525916.3XP_006525979.1  dmX-like protein 1 isoform X1

      Conserved Domains (4) summary
      COG2319
      Location:28253067
      WD40; WD40 repeat [General function prediction only]
      pfam12234
      Location:11391875
      Rav1p_C; RAVE protein 1 C terminal
      sd00039
      Location:28362881
      7WD40; WD40 repeat [structural motif]
      cl02567
      Location:27923049
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    2. XM_006525918.3XP_006525981.1  dmX-like protein 1 isoform X3

      Conserved Domains (4) summary
      COG2319
      Location:27873029
      WD40; WD40 repeat [General function prediction only]
      pfam12234
      Location:11391875
      Rav1p_C; RAVE protein 1 C terminal
      sd00039
      Location:27982843
      7WD40; WD40 repeat [structural motif]
      cl02567
      Location:27543011
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    3. XM_006525917.3XP_006525980.1  dmX-like protein 1 isoform X2

      Conserved Domains (4) summary
      COG2319
      Location:28043046
      WD40; WD40 repeat [General function prediction only]
      pfam12234
      Location:11391875
      Rav1p_C; RAVE protein 1 C terminal
      sd00039
      Location:28152860
      7WD40; WD40 repeat [structural motif]
      cl02567
      Location:27713028
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
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