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    Arid1b AT rich interactive domain 1B (SWI-like) [ Mus musculus (house mouse) ]

    Gene ID: 239985, updated on 31-Jan-2019

    Summary

    Official Symbol
    Arid1bprovided by MGI
    Official Full Name
    AT rich interactive domain 1B (SWI-like)provided by MGI
    Primary source
    MGI:MGI:1926129
    See related
    Ensembl:ENSMUSG00000069729
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Ardi1b; BAF250B; AI836955; mKIAA1235; 8030481M12; 9330189K18Rik; B230217J03Rik
    Expression
    Ubiquitous expression in adrenal adult (RPKM 12.5), ovary adult (RPKM 11.0) and 28 other tissues See more
    Orthologs

    Genomic context

    See Arid1b in Genome Data Viewer
    Location:
    17; 17 A1
    Exon count:
    22
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 17 NC_000083.6 (4994191..5347656)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 17 NC_000083.5 (4995074..5347656)

    Chromosome 17 - NC_000083.6Genomic Context describing neighboring genes Neighboring gene predicted gene, 34507 Neighboring gene predicted gene, 41517 Neighboring gene predicted gene, 34625 Neighboring gene tubulin, alpha 1B pseudogene Neighboring gene predicted gene, 34854 Neighboring gene transmembrane protein 242 Neighboring gene predicted gene 29050 Neighboring gene lactate dehydrogenase A-like 6B

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    Pathways from BioSystems

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    DNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    Process Evidence Code Pubs
    chromatin organization IEA
    Inferred from Electronic Annotation
    more info
     
    chromatin remodeling IC
    Inferred by Curator
    more info
    PubMed 
    dendritic cell dendrite assembly IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    dendritic spine development IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    nervous system development IEA
    Inferred from Electronic Annotation
    more info
     
    neuron-neuron synaptic transmission IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    Component Evidence Code Pubs
    SWI/SNF complex ISO
    Inferred from Sequence Orthology
    more info
     
    cytoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    cytosol ISO
    Inferred from Sequence Orthology
    more info
     
    nBAF complex IDA
    Inferred from Direct Assay
    more info
    PubMed 
    nucleoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    nucleus IDA
    Inferred from Direct Assay
    more info
    PubMed 
    nucleus ISO
    Inferred from Sequence Orthology
    more info
     
    plasma membrane ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    AT-rich interactive domain-containing protein 1B
    Names
    ARID domain-containing protein 1B
    AT rich interactive domain 1B (Swi1 like)
    BRG1-associated factor 250b

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001085355.1NP_001078824.1  AT-rich interactive domain-containing protein 1B

      Status: VALIDATED

      Source sequence(s)
      AC126929, AC166064, BF462904, CK389103
      Consensus CDS
      CCDS49929.1
      UniProtKB/Swiss-Prot
      E9Q4N7
      Related
      ENSMUSP00000111463.2, ENSMUST00000115797.8
      Conserved Domains (4) summary
      smart00501
      Location:10621149
      BRIGHT; BRIGHT, ARID (A/T-rich interaction domain) domain
      pfam09606
      Location:11741555
      Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
      pfam12031
      Location:19352190
      BAF250_C; SWI/SNF-like complex subunit BAF250/Osa
      cl26464
      Location:451863
      Atrophin-1; Atrophin-1 family

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000083.6 Reference GRCm38.p4 C57BL/6J

      Range
      4994191..5347656
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006523223.3XP_006523286.1  AT-rich interactive domain-containing protein 1B isoform X2

      See identical proteins and their annotated locations for XP_006523286.1

      Related
      ENSMUSP00000111465.1, ENSMUST00000115799.1
      Conserved Domains (4) summary
      smart00501
      Location:593680
      BRIGHT; BRIGHT, ARID (A/T-rich interaction domain) domain
      pfam09606
      Location:7091150
      Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
      pfam12031
      Location:14661721
      DUF3518; Domain of unknown function (DUF3518)
      cl02310
      Location:184337
      Glyco_hydro_81; Glycosyl hydrolase family 81
    2. XM_006523221.3XP_006523284.1  AT-rich interactive domain-containing protein 1B isoform X1

      Related
      ENSMUSP00000090398.4, ENSMUST00000092723.10
      Conserved Domains (4) summary
      smart00501
      Location:10541141
      BRIGHT; BRIGHT, ARID (A/T-rich interaction domain) domain
      pfam09606
      Location:11701611
      Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
      pfam12031
      Location:19272182
      DUF3518; Domain of unknown function (DUF3518)
      cl02310
      Location:705771
      Glyco_hydro_81; Glycosyl hydrolase family 81
    3. XM_006523222.3XP_006523285.1  AT-rich interactive domain-containing protein 1B isoform X2

      See identical proteins and their annotated locations for XP_006523285.1

      Conserved Domains (4) summary
      smart00501
      Location:593680
      BRIGHT; BRIGHT, ARID (A/T-rich interaction domain) domain
      pfam09606
      Location:7091150
      Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
      pfam12031
      Location:14661721
      DUF3518; Domain of unknown function (DUF3518)
      cl02310
      Location:184337
      Glyco_hydro_81; Glycosyl hydrolase family 81
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