Format

Send to:

Choose Destination
    • Showing Current items.

    Phf20l1 PHD finger protein 20-like 1 [ Mus musculus (house mouse) ]

    Gene ID: 239510, updated on 5-Aug-2018

    Summary

    Official Symbol
    Phf20l1provided by MGI
    Official Full Name
    PHD finger protein 20-like 1provided by MGI
    Primary source
    MGI:MGI:2444412
    See related
    Ensembl:ENSMUSG00000072501
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    CGI-72; E130113K22Rik
    Expression
    Broad expression in CNS E18 (RPKM 6.6), CNS E14 (RPKM 6.2) and 25 other tissues See more
    Orthologs

    Genomic context

    See Phf20l1 in Genome Data Viewer
    Location:
    15; 15 D2
    Exon count:
    22
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 15 NC_000081.6 (66577519..66647043)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 15 NC_000081.5 (66409134..66476817)

    Chromosome 15 - NC_000081.6Genomic Context describing neighboring genes Neighboring gene leucine rich repeat containing 6 (testis) Neighboring gene predicted gene, 31006 Neighboring gene transmembrane protein 71 Neighboring gene thyroglobulin Neighboring gene src-like adaptor Neighboring gene predicted gene, 46514 Neighboring gene cellular communication network factor 4

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    metal ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    biological_process ND
    No biological Data available
    more info
     
    regulation of transcription, DNA-templated IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    cellular_component ND
    No biological Data available
    more info
     
    nucleus IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    PHD finger protein 20-like protein 1
    Names
    tudor domain-containing protein PHF20L1

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001081409.1NP_001074878.1  PHD finger protein 20-like protein 1

      See identical proteins and their annotated locations for NP_001074878.1

      Status: PROVISIONAL

      Source sequence(s)
      AC163443
      Consensus CDS
      CCDS49621.1
      UniProtKB/Swiss-Prot
      Q8CCJ9
      Related
      ENSMUSP00000155487.1, ENSMUST00000229160.1
      Conserved Domains (5) summary
      cd04508
      Location:90135
      TUDOR; Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains. For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to ...
      cd15633
      Location:683728
      PHD_PHF20L1; PHD finger found in PHD finger protein 20-like protein 1 (P20L1)
      pfam12618
      Location:210317
      DUF3776; Protein of unknown function (DUF3776)
      pfam16660
      Location:318383
      PHD20L1_u1; PHD finger protein 20-like protein 1
      cl17705
      Location:368
      MBT; mbt repeat

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000081.6 Reference GRCm38.p4 C57BL/6J

      Range
      66577519..66647043
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006520916.3XP_006520979.1  PHD finger protein 20-like protein 1 isoform X1

      See identical proteins and their annotated locations for XP_006520979.1

      Conserved Domains (5) summary
      cd04508
      Location:90135
      TUDOR; Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains. For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to ...
      cd15633
      Location:688733
      PHD_PHF20L1; PHD finger found in PHD finger protein 20-like protein 1 (P20L1)
      pfam12618
      Location:214322
      DUF3776; Protein of unknown function (DUF3776)
      pfam16660
      Location:323388
      PHD20L1_u1; PHD finger protein 20-like protein 1
      cl17705
      Location:368
      MBT; mbt repeat
    2. XM_006520919.3XP_006520982.1  PHD finger protein 20-like protein 1 isoform X3

      Related
      ENSMUSP00000035682.9, ENSMUST00000048188.9
      Conserved Domains (5) summary
      cd04508
      Location:90135
      TUDOR; Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains. For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to ...
      cd15633
      Location:684729
      PHD_PHF20L1; PHD finger found in PHD finger protein 20-like protein 1 (P20L1)
      pfam12618
      Location:210318
      DUF3776; Protein of unknown function (DUF3776)
      pfam16660
      Location:319384
      PHD20L1_u1; PHD finger protein 20-like protein 1
      cl17705
      Location:368
      MBT; mbt repeat
    3. XM_006520917.3XP_006520980.1  PHD finger protein 20-like protein 1 isoform X1

      See identical proteins and their annotated locations for XP_006520980.1

      Conserved Domains (5) summary
      cd04508
      Location:90135
      TUDOR; Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains. For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to ...
      cd15633
      Location:688733
      PHD_PHF20L1; PHD finger found in PHD finger protein 20-like protein 1 (P20L1)
      pfam12618
      Location:214322
      DUF3776; Protein of unknown function (DUF3776)
      pfam16660
      Location:323388
      PHD20L1_u1; PHD finger protein 20-like protein 1
      cl17705
      Location:368
      MBT; mbt repeat
    4. XM_006520918.3XP_006520981.1  PHD finger protein 20-like protein 1 isoform X2

      Conserved Domains (5) summary
      cd04508
      Location:90135
      TUDOR; Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains. For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to ...
      cd15633
      Location:687732
      PHD_PHF20L1; PHD finger found in PHD finger protein 20-like protein 1 (P20L1)
      pfam12618
      Location:214321
      DUF3776; Protein of unknown function (DUF3776)
      pfam16660
      Location:322387
      PHD20L1_u1; PHD finger protein 20-like protein 1
      cl17705
      Location:368
      MBT; mbt repeat
    5. XM_006520920.3XP_006520983.1  PHD finger protein 20-like protein 1 isoform X4

      Conserved Domains (5) summary
      cd04508
      Location:90135
      TUDOR; Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains. For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to ...
      cd15633
      Location:658703
      PHD_PHF20L1; PHD finger found in PHD finger protein 20-like protein 1 (P20L1)
      pfam12618
      Location:184292
      DUF3776; Protein of unknown function (DUF3776)
      pfam16660
      Location:293358
      PHD20L1_u1; PHD finger protein 20-like protein 1
      cl17705
      Location:368
      MBT; mbt repeat
    6. XM_006520921.3XP_006520984.1  PHD finger protein 20-like protein 1 isoform X5

      Related
      ENSMUSP00000155465.1, ENSMUST00000230948.1
      Conserved Domains (5) summary
      cd04508
      Location:90135
      TUDOR; Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains. For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to ...
      cd15633
      Location:657702
      PHD_PHF20L1; PHD finger found in PHD finger protein 20-like protein 1 (P20L1)
      pfam12618
      Location:184291
      DUF3776; Protein of unknown function (DUF3776)
      pfam16660
      Location:292357
      PHD20L1_u1; PHD finger protein 20-like protein 1
      cl17705
      Location:368
      MBT; mbt repeat
    7. XM_017316601.1XP_017172090.1  PHD finger protein 20-like protein 1 isoform X5

      Conserved Domains (5) summary
      cd04508
      Location:90135
      TUDOR; Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains. For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to ...
      cd15633
      Location:657702
      PHD_PHF20L1; PHD finger found in PHD finger protein 20-like protein 1 (P20L1)
      pfam12618
      Location:184291
      DUF3776; Protein of unknown function (DUF3776)
      pfam16660
      Location:292357
      PHD20L1_u1; PHD finger protein 20-like protein 1
      cl17705
      Location:368
      MBT; mbt repeat
    8. XM_006520926.3XP_006520989.1  PHD finger protein 20-like protein 1 isoform X6

      Related
      ENSMUSP00000155575.1, ENSMUST00000230882.1
      Conserved Domains (3) summary
      cd04508
      Location:90135
      TUDOR; Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains. For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to ...
      pfam12618
      Location:184284
      DUF3776; Protein of unknown function (DUF3776)
      cl17705
      Location:368
      MBT; mbt repeat

    RNA

    1. XR_001781526.1 RNA Sequence

    2. XR_001781527.1 RNA Sequence

    3. XR_001781530.1 RNA Sequence

    4. XR_001781529.1 RNA Sequence

    5. XR_001781531.1 RNA Sequence

    6. XR_001781528.1 RNA Sequence

    7. XR_001781525.1 RNA Sequence

    8. XR_001781524.1 RNA Sequence

    9. XR_001781532.1 RNA Sequence

    10. XR_001781533.1 RNA Sequence

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_178718.2: Suppressed sequence

      Description
      NM_178718.2: This RefSeq was suppressed temporarily based on the calculation that the annotated protein was shorter than a protein or proteins from a putative ortholog.
    Support Center