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    Ccnb1ip1 cyclin B1 interacting protein 1 [ Mus musculus (house mouse) ]

    Gene ID: 239083, updated on 31-Jan-2019

    Summary

    Official Symbol
    Ccnb1ip1provided by MGI
    Official Full Name
    cyclin B1 interacting protein 1provided by MGI
    Primary source
    MGI:MGI:2685134
    See related
    Ensembl:ENSMUSG00000071470
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    mei4; Gm288; Hei10
    Expression
    Restricted expression toward testis adult (RPKM 2.9) See more
    Orthologs

    Genomic context

    See Ccnb1ip1 in Genome Data Viewer
    Location:
    14; 14 C1
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 14 NC_000080.6 (50789249..50795728, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 14 NC_000080.5 (51408924..51415403, complement)

    Chromosome 14 - NC_000080.6Genomic Context describing neighboring genes Neighboring gene olfactory receptor 749 Neighboring gene tetratricopeptide repeat domain 5 Neighboring gene predicted gene 10916 Neighboring gene ribonuclease P RNA component H1 Neighboring gene poly (ADP-ribose) polymerase family, member 2

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Chemically induced (ENU) (1)  1 citation
    • Endonuclease-mediated (1) 

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    metal ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    transferase activity IEA
    Inferred from Electronic Annotation
    more info
     
    ubiquitin protein ligase activity TAS
    Traceable Author Statement
    more info
    PubMed 
    ubiquitin-protein transferase activity TAS
    Traceable Author Statement
    more info
    PubMed 
    Process Evidence Code Pubs
    blastocyst formation IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    chiasma assembly IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    meiotic cell cycle IEA
    Inferred from Electronic Annotation
    more info
     
    protein ubiquitination TAS
    Traceable Author Statement
    more info
    PubMed 
    reciprocal meiotic recombination IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    reciprocal meiotic recombination IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    spermatid development IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    Component Evidence Code Pubs
    chromosome IEA
    Inferred from Electronic Annotation
    more info
     
    condensed nuclear chromosome IDA
    Inferred from Direct Assay
    more info
    PubMed 
    nucleus IEA
    Inferred from Electronic Annotation
    more info
     
    colocalizes_with synaptonemal complex IDA
    Inferred from Direct Assay
    more info
    PubMed 

    General protein information

    Preferred Names
    E3 ubiquitin-protein ligase CCNB1IP1
    Names
    RING-type E3 ubiquitin transferase CCNB1IP1
    NP_001104589.1

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001111119.1NP_001104589.1  E3 ubiquitin-protein ligase CCNB1IP1

      See identical proteins and their annotated locations for NP_001104589.1

      Status: PROVISIONAL

      Source sequence(s)
      AC027184
      Consensus CDS
      CCDS49477.1
      UniProtKB/Swiss-Prot
      D3Z3K2
      Related
      ENSMUSP00000093622.3, ENSMUST00000095932.4
      Conserved Domains (2) summary
      pfam14634
      Location:1052
      zf-RING_5; zinc-RING finger domain
      cl27218
      Location:100175
      OmpH; Outer membrane protein (OmpH-like)

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000080.6 Reference GRCm38.p4 C57BL/6J

      Range
      50789249..50795728 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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