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    Cfdp1 craniofacial development protein 1 [ Mus musculus (house mouse) ]

    Gene ID: 23837, updated on 23-Jun-2021

    Summary

    Official Symbol
    Cfdp1provided by MGI
    Official Full Name
    craniofacial development protein 1provided by MGI
    Primary source
    MGI:MGI:1344403
    See related
    Ensembl:ENSMUSG00000031954
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Bcn; cp2; Bcnt; Cfdp; cp27; Bucent; AA408409; Bucentaur
    Expression
    Broad expression in CNS E11.5 (RPKM 77.7), placenta adult (RPKM 58.1) and 16 other tissues See more
    Orthologs
    NEW
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    Genomic context

    See Cfdp1 in Genome Data Viewer
    Location:
    8; 8 E1
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 8 NC_000074.7 (112493314..112580969, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 8 NC_000074.6 (111766682..111854337, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 8 NC_000074.5 (114292373..114378210, complement)

    Chromosome 8 - NC_000074.7Genomic Context describing neighboring genes Neighboring gene VISTA enhancer mm1686 Neighboring gene breast cancer anti-estrogen resistance 1 Neighboring gene predicted gene, 51589 Neighboring gene predicted gene, 39252 Neighboring gene transmembrane protein 170 Neighboring gene carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 5

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    General protein information

    Preferred Names
    craniofacial development protein 1
    Names
    27 kDa craniofacial protein

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001368337.1NP_001355266.1  craniofacial development protein 1 isoform 4

      Status: VALIDATED

      Source sequence(s)
      AC127315
    2. NM_001368338.1NP_001355267.1  craniofacial development protein 1 isoform 5

      Status: VALIDATED

      Source sequence(s)
      AC127315
    3. NM_011801.2NP_035931.1  craniofacial development protein 1 isoform 1

      See identical proteins and their annotated locations for NP_035931.1

      Status: VALIDATED

      Source sequence(s)
      AC127315
      Consensus CDS
      CCDS22680.1
      UniProtKB/Swiss-Prot
      O88271
      Related
      ENSMUSP00000034432.6, ENSMUST00000034432.7
      Conserved Domains (1) summary
      pfam07572
      Location:218291
      BCNT; Bucentaur or craniofacial development

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000074.7 Reference GRCm39 C57BL/6J

      Range
      112493314..112580969 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001368335.1: Suppressed sequence

      Description
      NM_001368335.1: This RefSeq was removed because currently there is insufficient support for the transcript and the protein.
    2. NM_001368336.1: Suppressed sequence

      Description
      NM_001368336.1: This RefSeq was removed because currently there is insufficient support for the transcript and the protein.
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