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    Cfdp1 craniofacial development protein 1 [ Mus musculus (house mouse) ]

    Gene ID: 23837, updated on 7-Feb-2019

    Summary

    Official Symbol
    Cfdp1provided by MGI
    Official Full Name
    craniofacial development protein 1provided by MGI
    Primary source
    MGI:MGI:1344403
    See related
    Ensembl:ENSMUSG00000031954
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Bcnt; Cfdp; cp27; AA408409; Bucentaur
    Expression
    Broad expression in CNS E11.5 (RPKM 77.7), placenta adult (RPKM 58.1) and 16 other tissues See more
    Orthologs

    Genomic context

    See Cfdp1 in Genome Data Viewer
    Location:
    8; 8 E1
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 8 NC_000074.6 (111768473..111854310, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 8 NC_000074.5 (114292373..114378210, complement)

    Chromosome 8 - NC_000074.6Genomic Context describing neighboring genes Neighboring gene breast cancer anti-estrogen resistance 1 Neighboring gene predicted gene, 39252 Neighboring gene transmembrane protein 170 Neighboring gene carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 5

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Process Evidence Code Pubs
    cell adhesion IDA
    Inferred from Direct Assay
    more info
    PubMed 
    multicellular organism development IEA
    Inferred from Electronic Annotation
    more info
     
    negative regulation of fibroblast apoptotic process IDA
    Inferred from Direct Assay
    more info
    PubMed 
    regulation of cell proliferation IDA
    Inferred from Direct Assay
    more info
    PubMed 
    regulation of cell shape IDA
    Inferred from Direct Assay
    more info
    PubMed 
    Component Evidence Code Pubs
    basement membrane TAS
    Traceable Author Statement
    more info
    PubMed 
    chromosome IEA
    Inferred from Electronic Annotation
    more info
     
    chromosome, centromeric region IEA
    Inferred from Electronic Annotation
    more info
     
    kinetochore IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    craniofacial development protein 1
    Names
    27 kDa craniofacial protein

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001368335.1NP_001355264.1  craniofacial development protein 1 isoform 2

      Status: VALIDATED

      Source sequence(s)
      AC127315
    2. NM_001368336.1NP_001355265.1  craniofacial development protein 1 isoform 3

      Status: VALIDATED

      Source sequence(s)
      AC127315
    3. NM_001368337.1NP_001355266.1  craniofacial development protein 1 isoform 4

      Status: VALIDATED

      Source sequence(s)
      AC127315
    4. NM_001368338.1NP_001355267.1  craniofacial development protein 1 isoform 5

      Status: VALIDATED

      Source sequence(s)
      AC127315
    5. NM_011801.2NP_035931.1  craniofacial development protein 1 isoform 1

      See identical proteins and their annotated locations for NP_035931.1

      Status: VALIDATED

      Source sequence(s)
      AC127315
      Consensus CDS
      CCDS22680.1
      UniProtKB/Swiss-Prot
      O88271
      Related
      ENSMUSP00000034432.5, ENSMUST00000034432.6
      Conserved Domains (1) summary
      pfam07572
      Location:218291
      BCNT; Bucentaur or craniofacial development

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000074.6 Reference GRCm38.p4 C57BL/6J

      Range
      111768473..111854310 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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